Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18080 764 / 0 BGLU44 B-S glucosidase 44 (.1) AT3G18070 728 / 0 BGLU43 beta glucosidase 43 (.1.2) AT1G26560 480 / 7e-166 BGLU40 beta glucosidase 40 (.1) AT5G54570 462 / 2e-158 BGLU41 beta glucosidase 41 (.1) AT2G44450 434 / 5e-148 BGLU15 beta glucosidase 15 (.1) AT5G44640 432 / 2e-147 BGLU13 beta glucosidase 13 (.1) AT2G44480 429 / 9e-146 BGLU17 beta glucosidase 17 (.1.2) AT5G42260 424 / 3e-144 BGLU12 beta glucosidase 12 (.1) AT5G36890 422 / 1e-143 BGLU42 beta glucosidase 42 (.1.2) AT1G02850 417 / 1e-141 BGLU11 beta glucosidase 11 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009013 [exp] 562 / 0 AT3G18080 516 / 0.0 B-S glucosidase 44 (.1) Lus10031235 [exp] 473 / 7e-163 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 466 / 3e-160 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 466 / 4e-160 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 464 / 2e-159 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10036885 [exp] 459 / 7e-158 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 455 / 3e-156 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10020232 [exp] 451 / 1e-154 AT5G36890 699 / 0.0 beta glucosidase 42 (.1.2) Lus10004654 [exp] 451 / 2e-154 AT1G26560 773 / 0.0 beta glucosidase 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041300 [exp] 771 / 0 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 768 / 0 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.T085301 [exp] 489 / 2e-169 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 487 / 9e-169 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 475 / 4e-164 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.008G094200 [exp] 468 / 2e-161 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 460 / 3e-158 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.010G159900 [exp] 459 / 7e-158 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.010G178800 [exp] 455 / 2e-156 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.001G227300 [exp] 450 / 3e-154 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10009644 pacid=23140093 polypeptide=Lus10009644 locus=Lus10009644.g ID=Lus10009644.BGIv1.0 annot-version=v1.0 ATGAGAGGCCGCCGCCCGCGAGATGTTCCTTCCCTTAACGACCCAATGTCCCTCGCCGTCTGTTGCTTGCTTCTCCTAGCTACAACATTCCAACAGTACA GCGTTTATGGGGAAGACACGTGGCGGACGGAGGAGGTGGAGCTGGACACCGGCGGGCTGAGCCGGAAGAGCTTTCCGAAGGGGTTCTTGTTCGGAACGGC GACGTCGGCGTATCAAGTTGAAGGAATGGCTAGTAAGGACGGCCGTGGGCCCAGCATTTGGGATTATTTCATTCAGCAGAGCCCAGGTAGAGTGTCCAAT AATGCTACCGGAGACGTGGCTGTTGATCAATACCACCGTTACAAGGAGGATGTAGATATAATGGTGAATTTGAACTTCGATGCGTACAGATTCTCCATTT CTTGGTCAAGAATCTTCCCAAATGGAACCGGTAAGGTTAACGAGAAGGGTGTCGCGTATTACAACAGGTTGATAGACTACATGATCGAAAAAGGTATCAC TCCTTATGCAAACCTTTACCACTATGACATGCCTCTAGCATTGGAGAAGAGATACATGGGGTTACTCAATGGTCAAGTTGTGGAGGACTATGCGGACTAT GCAGAGTTCTGCTTCAAGACGTTCGGGGATAGGGTGAAGAACTGGATGACATTCAACGAGCCAAGAGTGACGGCCGCACTAGGATATGACAACGGAATTT TCGCACCGGGGAGGTGTTCGAAGTCGTATGGAAATTGTACGGAAGGGAATTCCGGAACCGAACCGTATATTGCTGCTCATAACCTGATCTTAGCTCATGC TGCAGCCGTACAGAGATACCGCCAAAAGTATCAAGAGAAACAAAAGGGTAGGATTGGAATATTGCTTGATTTCGTTTGGTATGAGCCACTCACTAGAGGG AAAGCTGATAACTATGCTGCTCAGAGAGCTAGGGACTTCCACATCGGATGGTTTCTTCACCCAATAGTGTATGGTGAGTACCCAAAGACGATGCAAGAAA TCCTTGGGAGCAGGCTGCCCAAATTCACAACAGAGGAGGGTAAAATGGTAAAAGGCTCATTTGATTACATTGGCATCAACCAATACACAGCTTACTATAT GTATGATCCACACCAGAAGAACCAGCCTAAGGAGTTAGGCTACCAGCAAGACTGGAATGCTGGATTTGCCTTTGCCAAAAATGGCGTCCCGATCGGTCCA AGAGCACATTCGTATTGGCTGTACAATGTCCCATGGGGACTGTACAAGTGTTTAATGTATGTCAAAGAGCGATACGGTAACCCAACCGTGATCTTGTCCG AAAACGGTATGGATCAACCGGGAAACGTTACATTCCCTAAGGTGTTAAAAGACACGGTAAGGGTGAACTACTACAAGGCTTACCTTCAGCAGCTAAAGAA GGCGGCCGATGATGGAGCCAACGTGATTGGCTACTTCGCGTGGTCGTTGCTCGACAACTTCGAATGGCTATCTGGCTACACCTCGAGATTCGGGATCGTT TACGTAGACTATGGAAACCTCAAGCGGTATCCGAAGATGTCGGCTCACTGGTTTCAGAAGATGCTCAACCGTAAGAAGGAATAA
AA sequence Show only first row Show all	>Lus10009644 pacid=23140093 polypeptide=Lus10009644 locus=Lus10009644.g ID=Lus10009644.BGIv1.0 annot-version=v1.0 MRGRRPRDVPSLNDPMSLAVCCLLLLATTFQQYSVYGEDTWRTEEVELDTGGLSRKSFPKGFLFGTATSAYQVEGMASKDGRGPSIWDYFIQQSPGRVSN NATGDVAVDQYHRYKEDVDIMVNLNFDAYRFSISWSRIFPNGTGKVNEKGVAYYNRLIDYMIEKGITPYANLYHYDMPLALEKRYMGLLNGQVVEDYADY AEFCFKTFGDRVKNWMTFNEPRVTAALGYDNGIFAPGRCSKSYGNCTEGNSGTEPYIAAHNLILAHAAAVQRYRQKYQEKQKGRIGILLDFVWYEPLTRG KADNYAAQRARDFHIGWFLHPIVYGEYPKTMQEILGSRLPKFTTEEGKMVKGSFDYIGINQYTAYYMYDPHQKNQPKELGYQQDWNAGFAFAKNGVPIGP RAHSYWLYNVPWGLYKCLMYVKERYGNPTVILSENGMDQPGNVTFPKVLKDTVRVNYYKAYLQQLKKAADDGANVIGYFAWSLLDNFEWLSGYTSRFGIV YVDYGNLKRYPKMSAHWFQKMLNRKKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10009644 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Lus10008432 [exp]	6.4	0.8597
AT3G25680			unknown protein		Lus10035054 [exp]	14.2	0.8082
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10027728 [exp]	15.3	0.8090
AT5G10910			mraW methylase family protein ...		Lus10042729 [exp]	16.1	0.8096
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	16.4	0.8037
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	31.4	0.7743
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	58.9	0.7568
AT2G41950			unknown protein		Lus10016243 [exp]	60.7	0.7758
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001173 [exp]	75.5	0.7697
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	77.2	0.7685

Compare expression of checked genes

Lus10009644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.