Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57030 164 / 1e-48 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G22020 154 / 2e-44 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G74010 145 / 6e-42 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G74000 145 / 6e-42 SS3 strictosidine synthase 3 (.1) AT1G74020 144 / 1e-41 SS2 strictosidine synthase 2 (.1) AT1G08470 142 / 5e-40 SSL3 strictosidine synthase-like 3 (.1) AT2G41290 140 / 9e-40 SSL2 strictosidine synthase-like 2 (.1) AT3G57020 136 / 4e-38 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57010 136 / 4e-38 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41300 131 / 6e-36 SSL1 strictosidine synthase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009015 [exp] 428 / 2e-147 AT3G57030 190 / 6e-54 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009646 [exp] 284 / 3e-94 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10009014 [exp] 281 / 8e-91 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10009648 [exp] 247 / 2e-81 AT3G57030 192 / 4e-58 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009649 [exp] 227 / 1e-73 AT1G74020 155 / 6e-44 strictosidine synthase 2 (.1) Lus10009650 [exp] 206 / 2e-65 AT1G74010 156 / 3e-44 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10034411 [exp] 146 / 1e-42 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10008451 [exp] 147 / 9e-42 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10006331 [exp] 145 / 1e-41 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046200 [exp] 195 / 3e-61 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.015G037700 [exp] 193 / 2e-60 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1) Potri.008G109966 [exp] 182 / 7e-56 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 182 / 7e-56 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.016G037700 [exp] 160 / 1e-46 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.006G040900 [exp] 157 / 4e-46 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 157 / 4e-46 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.001G214500 [exp] 150 / 3e-43 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.007G130700 [exp] 125 / 2e-33 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 121 / 3e-32 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10009651 pacid=23140057 polypeptide=Lus10009651 locus=Lus10009651.g ID=Lus10009651.BGIv1.0 annot-version=v1.0 ATGGTTGGTTCATCATGTAGAGACACTTACGATAACAAAACCGAAACGGATTCCGAACCGGTTTGTGGATACCCGTTGGGTTTGGCATACAACAGTTTGA CAGGAGAGCTCTATATAGCTGACGCATACCAAGGCCTGATGATGGCCGGACCGGATGCCGGAATGCTAGCTAGGCCGCTTGGCACCACCGCGGAAGGCGT TCCTTTCTCCGCAACCACCGCCCTCGACTTCGATCTAGTGGCCGGAATCGTCTATTTCATTGACAGAAGCACCAAGTACCGGATCCGGGATTCAATCCTA GCGATTGAGTCAAACGACACAACAGGAAGGCTAATGCAGTACGACACAAACACGAGACAGGTCACCGTGCTCCTAAGGAACCTAGGTTTCCCCGGTGGCG TGGCTGTGAGCAACGACGGCTCGTTCATTCTAGTGATCGAAACCGGCCTCAACAAGACGACTCGGTTCTGGGTGAGGGGGCCCAAGGCCAACACATCCGA GCCGTTCTTAACAAACATCGTACACCCTGAAAACATCAAGCGGACGATTTTAGGCAAGTTCTGGATTGCAGCCATGGTGGCGAACCAACCACATTTCGAA TCAACGGTTCCGATCAGGGTGATGGCCGAAGAAATTCAAAAGGAAGTGAACGGCGCGATCATCTATATGACGTCCCTCGAGCCCGAGTACTATGGAACGA TTCACACGAGTGAGGTACACCCAGTCATTGATTAA
AA sequence Show only first row Show all	>Lus10009651 pacid=23140057 polypeptide=Lus10009651 locus=Lus10009651.g ID=Lus10009651.BGIv1.0 annot-version=v1.0 MVGSSCRDTYDNKTETDSEPVCGYPLGLAYNSLTGELYIADAYQGLMMAGPDAGMLARPLGTTAEGVPFSATTALDFDLVAGIVYFIDRSTKYRIRDSIL AIESNDTTGRLMQYDTNTRQVTVLLRNLGFPGGVAVSNDGSFILVIETGLNKTTRFWVRGPKANTSEPFLTNIVHPENIKRTILGKFWIAAMVANQPHFE STVPIRVMAEEIQKEVNGAIIYMTSLEPEYYGTIHTSEVHPVID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57030			Calcium-dependent phosphotries...		Lus10009651 [exp]	0	1
					Lus10029164 [exp]	5.1	0.8262
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10027306 [exp]	9.6	0.8810
AT3G09430			unknown protein		Lus10000245 [exp]	13.7	0.7481
AT2G17380		AP19	associated protein 19 (.1)		Lus10026316 [exp]	22.6	0.8066
AT5G52220			unknown protein		Lus10014990 [exp]	31.7	0.6959
AT4G17920			RING/U-box superfamily protein...		Lus10000487 [exp]	65.4	0.6900
AT1G79070			SNARE-associated protein-relat...		Lus10031217 [exp]	74.0	0.6858
					Lus10037800 [exp]	98.5	0.6371
AT1G72020			unknown protein		Lus10006080 [exp]	117.4	0.7172
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10029346 [exp]	125.8	0.7341

Compare expression of checked genes

Lus10009651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.