Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35520 172 / 2e-53 MIS12, ATMIS12 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009016 [exp] 419 / 1e-150 AT5G35520 160 / 1e-48 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055500 [exp] 254 / 3e-85 AT5G35520 205 / 2e-66 MIS12 HOMOLOGUE, ARABIDOPSIS MINICHROMOSOME INSTABILITY 12 \(MIS12\)-LIKE, minichromosome instability 12 (mis12)-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05859 [flax] [poplar] Mis12 Mis12 protein
Representative CDS sequence Show only first row Show all	>Lus10009652 pacid=23140048 polypeptide=Lus10009652 locus=Lus10009652.g ID=Lus10009652.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTTAGCAACGAAATCGGCAATCCAGTTTTCAAATCGTTCAATCTGGACCCACAAATCTTCATCAACGAAACCCTAAACACCGTCGACGACT TGCTCGACGACGCTTTCCACTTCTATCACGAGGAAGCTTTGGATCTTCTGAAAACCGAGGGATCCGAACGATCCCAGTTTCTGAAGGAGGGGATTGATTG CGTTCGGTACAAGGTGCAATCGGAGCTTGACAACCGGCTTGGGATGTGGGAGAAGTATTGCCTCCATCACTGTTTCGCAGCTCCCCAAGGCTTCTCCTTG CCCCAAACTGATGAATCTCCAGATCAAAGTTTGAGAAGTGAAGATATGCTTTCTAATCCAGCACTGGATGCACAATTGGATTCCCTGAGGGAAAGGCTTT CCATGGTCTCAAGGGAAGCCATTGAGCTTAACAAGGAACTTGAAGACTTAGAAAGACAATCTACTACAGCCGATCGCTGTACCCAACTCGTTGCTGATGT ATATCCGCCACACGAGCAAGATTCGGGCGATCAACTGTTTCAAGAGATGCTGCAAACGGCAACAGAGTTTCGTCAAAGGATACTGAATCTGAGACGTGGA AGTCCAGAGGAGGATGCAGAGAGCCATAAATCCAAGAAGATCTGTGACATTACCTCAATTTATGAGAAAGTCCTCTGTAATGCCAAGTTGGAAGATCTTC ATGAGTTTCTAGGTGAGTTGAAGAACAACTTCGAACTGCAGTCTTAA
AA sequence Show only first row Show all	>Lus10009652 pacid=23140048 polypeptide=Lus10009652 locus=Lus10009652.g ID=Lus10009652.BGIv1.0 annot-version=v1.0 MEEVSNEIGNPVFKSFNLDPQIFINETLNTVDDLLDDAFHFYHEEALDLLKTEGSERSQFLKEGIDCVRYKVQSELDNRLGMWEKYCLHHCFAAPQGFSL PQTDESPDQSLRSEDMLSNPALDAQLDSLRERLSMVSREAIELNKELEDLERQSTTADRCTQLVADVYPPHEQDSGDQLFQEMLQTATEFRQRILNLRRG SPEEDAESHKSKKICDITSIYEKVLCNAKLEDLHEFLGELKNNFELQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009652 [exp]	0	1
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	1.4	0.9696
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	2.4	0.9460
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	2.4	0.9425
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	4.2	0.9106
AT3G53730			Histone superfamily protein (....		Lus10040849 [exp]	6.0	0.9069
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10005576 [exp]	6.9	0.8898
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	8.8	0.8920
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	9.4	0.9236
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	10.2	0.9101
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	10.2	0.9192

Compare expression of checked genes

Lus10009652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.