Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 334 / 3e-118 Ribosomal protein L23/L15e family protein (.1) AT4G17390 333 / 7e-118 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009017 [exp] 363 / 7e-130 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1) Lus10004743 [exp] 360 / 3e-128 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10007805 [exp] 360 / 3e-128 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10000165 [exp] 358 / 3e-127 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10028965 [exp] 358 / 5e-127 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141500 [exp] 350 / 1e-124 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 350 / 1e-124 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.013G106800 [exp] 347 / 2e-123 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 347 / 2e-123 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 346 / 4e-123 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF00827 [flax] [poplar] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Lus10009653 pacid=23140024 polypeptide=Lus10009653 locus=Lus10009653.g ID=Lus10009653.BGIv1.0 annot-version=v1.0 ATGGGGGCGTACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGACGTGATGAGGTTTCTGCAGAGGGTAAGGTGCTGGGAGTATCGCCAGCATC CTTCGATCGTCCGAGTTACTCACCCTACTCGCCCTGACAAGGCTCGCCGCTTGGGCTACAAGGCTAAGCAGGGTTACGTAGTTTATCGAGTGCGTGTGAG GCGAGGTGGAAGGAAGAGGCCAGTGCCGAAGGGTATTGTCTACGGTAAACCAACCAACCAGGGAGTCACCCAGCTGAAATTCCAGCGTAGCAAGCGATCG GTTGCGGAGGAGCGTGCTGGGAGGAAGCTAGCTGGACTTAAGGTTCTCAACTCATACTGGCTCAACGAGGATTCGACGTACAAGTACTTTGAGGTGATCC TGGTTGATGCTGCTCACAATGCCATCCGAAACGACCCGAGGATCAACTGGATCTGCAACCCGGTCCACAAGCACAGGGAGCTTCGCGGTCTTACCTCTGC AGGGAAGAAGTACAGAGGTCTCCGAGGGAAAGGGTCTCGGTTCCACAAGAACAAGCCGTCGAGGAGGGCTACTTGGAAGAGGAACAACACGCTGTCGCTT CGCCGATACCGTTCATAA
AA sequence Show only first row Show all	>Lus10009653 pacid=23140024 polypeptide=Lus10009653 locus=Lus10009653.g ID=Lus10009653.BGIv1.0 annot-version=v1.0 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLAGLKVLNSYWLNEDSTYKYFEVILVDAAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGSRFHKNKPSRRATWKRNNTLSL RRYRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	0	1
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	2.2	0.8873
AT1G77580			Plant protein of unknown funct...		Lus10042719 [exp]	2.8	0.8899
AT2G20635			ATP binding;protein kinases;pr...		Lus10033673 [exp]	3.2	0.8983
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	4.2	0.8634
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	6.2	0.8677
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	7.7	0.8823
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	9.2	0.8704
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10018688 [exp]	9.6	0.8598
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	10.2	0.8883
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	12.6	0.8636

Compare expression of checked genes

Lus10009653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.