Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25170 132 / 1e-35 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) AT5G61490 90 / 1e-20 Uncharacterised conserved protein (UCP012943) (.1) AT5G61495 55 / 4e-09 unknown protein AT5G54540 49 / 3e-06 Uncharacterised conserved protein (UCP012943) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009018 [exp] 410 / 2e-139 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10028185 [exp] 69 / 2e-12 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10014803 [exp] 49 / 2e-06 AT5G54540 139 / 8e-39 Uncharacterised conserved protein (UCP012943) (.1) Lus10003594 [exp] 45 / 5e-05 AT5G54540 117 / 2e-30 Uncharacterised conserved protein (UCP012943) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126300 [exp] 177 / 8e-53 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.003G107400 [exp] 171 / 3e-50 AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.014G057200 [exp] 97 / 7e-23 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009654 pacid=23140041 polypeptide=Lus10009654 locus=Lus10009654.g ID=Lus10009654.BGIv1.0 annot-version=v1.0 ATGGGCGGGATCGGCGGAGGAGCTGGCGGCGGCGGCGGAGGCGCAGGAGGAAACATGATGAGAGCCGTGGGGAGGGCCGTCACTCGAGCTGGAGTCGCCG GTGTTCAGGATCCCATTTCCAAGACCCCCTCCACCGCCGCCTCATCCAACTCGGCTTCTCCCGCGTCGAGGAAGACCCGCAGCTCTTCTGCTTCGTCGGG TTCCGGGTCGAGTCTGAAGGCTGAGTTTCCAGCCAACTTCGGGTGGGCGTCTCCGTTTGGTAGTGGCTCATACTACGGCGGCGGTGGTCCGTTTGATGAG TACGCGAGGGATTGGGAGTGGGTCGACGGCGGCGATGGCGATAGCACTTCGTCTGATGATAAGGAGGTGGTTATCTACGGCCTTACTGATGACTTCGGAT TCGGGTCGGCTCCTTCTGCTGATGAAGTTCACTCCGCTGTCAATCAACTCTCCCAGTTTGTTGGATCCGGCCGATACAGTCGGCTGATTCGGGACAAGTA TGGCGATGAAGAGAGTTCTTATTCAACTGGGTTCGAGCTGGACTGGAAAGAGCCTTCTTCTCCGCAGTTCTCCAGCACTAGTACCAGAGCTCTGCATCCT TATGGAAGTGACACGGTTCACAGAGCTTTCCATTTGCTGCAGAGTGACCAATCTGTTCAGAGAATGGTGACTTCTTTATCGTCTGATGCTGCAATCTGGG ATGCTGTAATGAACAACGAGGTGGTTAGAGAGCTTAGGCAGGCTTACTATCCAGGCGAAAGGAGCGAGGATTCGACGACTCCAAAGAGTACTGTAAGTGA CGAGGCATATGATGTTGAAGAAACTAGTGGTCTGAACATTGTGAAGTGGATCATTGACAATACTAAAGCAAGAGTGACAGAGTTGATGGAGAACATAGCA AAGCTGTTGAACATGGTCTTCGCTCCTCGTGCTGGAGATGATCACAACGGTGGGGAAAGAGCTGGAATCGCCTTCGACGAGAAGGTCACGACTTCGTTGC TTCTCTCTGTGGTGGTTCTGCTGATTGTGGTTACGTTGACTGAAATGTAG
AA sequence Show only first row Show all	>Lus10009654 pacid=23140041 polypeptide=Lus10009654 locus=Lus10009654.g ID=Lus10009654.BGIv1.0 annot-version=v1.0 MGGIGGGAGGGGGGAGGNMMRAVGRAVTRAGVAGVQDPISKTPSTAASSNSASPASRKTRSSSASSGSGSSLKAEFPANFGWASPFGSGSYYGGGGPFDE YARDWEWVDGGDGDSTSSDDKEVVIYGLTDDFGFGSAPSADEVHSAVNQLSQFVGSGRYSRLIRDKYGDEESSYSTGFELDWKEPSSPQFSSTSTRALHP YGSDTVHRAFHLLQSDQSVQRMVTSLSSDAAIWDAVMNNEVVRELRQAYYPGERSEDSTTPKSTVSDEAYDVEETSGLNIVKWIIDNTKARVTELMENIA KLLNMVFAPRAGDDHNGGERAGIAFDEKVTTSLLLSVVVLLIVVTLTEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25170			Uncharacterised conserved prot...		Lus10009654 [exp]	0	1
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029728 [exp]	2.4	0.9533
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029727 [exp]	4.2	0.9462
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10023128 [exp]	4.5	0.9424
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	6.2	0.9428
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	7.5	0.9288
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	11.0	0.9295
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	11.2	0.8876
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	11.8	0.9328
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	12.4	0.9224
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	15.5	0.9231

Compare expression of checked genes

Lus10009654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.