Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61520 517 / 1e-180 Major facilitator superfamily protein (.1.2) AT4G02050 493 / 3e-171 STP7 sugar transporter protein 7 (.1) AT3G19940 493 / 6e-171 Major facilitator superfamily protein (.1) AT1G11260 490 / 7e-170 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19930 489 / 9e-170 ATSTP4, STP4 sugar transporter 4 (.1) AT4G21480 483 / 4e-167 STP12 sugar transporter protein 12 (.1) AT5G23270 476 / 2e-164 ATSTP11, STP11 sugar transporter 11 (.1) AT1G50310 473 / 3e-163 ATSTP9 sugar transporter 9 (.1) AT5G26340 468 / 3e-161 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G34580 442 / 4e-151 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013441 [exp] 521 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10010534 [exp] 479 / 2e-165 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 477 / 1e-164 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10018422 [exp] 474 / 2e-163 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10036325 [exp] 469 / 7e-162 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10021924 [exp] 462 / 1e-158 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002597 [exp] 459 / 4e-158 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10022421 [exp] 444 / 1e-151 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10020934 [exp] 441 / 7e-151 AT1G34580 664 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120700 [exp] 645 / 0 AT5G61520 570 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G233500 [exp] 641 / 0 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G090700 [exp] 508 / 4e-177 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 507 / 1e-176 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 499 / 1e-173 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 493 / 3e-171 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 493 / 3e-171 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.006G189100 [exp] 473 / 2e-163 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.018G113300 [exp] 470 / 6e-162 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.004G033600 [exp] 467 / 9e-161 AT1G11260 822 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10009656 pacid=23140038 polypeptide=Lus10009656 locus=Lus10009656.g ID=Lus10009656.BGIv1.0 annot-version=v1.0 ATGGCGGTTGAGGCGTTATCAACCAAGAACGATGAGTCGTTGTATCACTACAACGGTCGTATCACTTTCTTCGTGGCTCTGTCCTGCATGATGGCAGCCA TGGGCGGCGTGATCTTCGGGTACGACATTGGAATCTCCGGTGGCGTAACGTCGATGGAGCCGTTCCTCGAGAAATTCTTCCCTGAAGTCGTCACCAAAAT GAAGCACGACGCAAAAGTCAGCAACTACTGCAAATTCAACAGCGAGTTGCTCACTTCGTTCACCTCCTCCCTCTACATCGCCGGCCTTGTAGCCTCCTTC TTCGCGTCGTGGATCACGAAGTCGCACGGCAGGAGGCCTTCCATCCTCGCCGGTGGAGCCGCCTTCCTTGCCGGAGCGGCGCTGGGCGCCGCGGCGACGA ACGTCTACATGCTCATCATTGGGAGAGTCCTCCTCGGCATTGGCGTCGGCTTCTCCAACCAGTCCGTCCCTCTCTACCTCTCCGAGATGGCTCCGGCGAG ACTCCGGGGAGCTGTCAACAACGGGTTCCAGCTCAGCATCGGGATTGGCGTCATGGCGGCGAATCTCATCAACTTCGGAACGGAGAAGATCAGAGCAGGG TACGGATGGCGGATCTCGTTGGGGATGGCAGCCGTTCCGGCCGCCATCCTCACAGTCGGAGCTATCTTCCTCCCGGAGACTCCTAGCAGCGTGATCCAAC GGACAAACGACAGAGAGAAAGCAAGGAAAGTTCTGGAGAAAATCAGAGGAACTTCCGAAATCGAATCAGAGCTCGAGGACCTAACCATAGCTAGCCAGAT CTCAAATTCGATTTCAACCCACAATCAGTTCCGAACAATAATCAAAATCAAATACAGGCCGCAGCTCGTGATGGCGATCGCGATCCCGTTCTTCCAGCAG GTCACCGGAATCAACGTCATCGCCTTCTACGCTCCGTTGCTCTTCCGCACGATCGGAATGGGGGAGAGCGCTTCTCTGATGTCCGCCGTCTTGACCGGCG CAATCGGAATCCTAACCACCTTCCTCTCGATGCTGATCGTGGACAGGATGGGGAGGCGGAAGCTGTTCCTCATCGGCGGGATCCAGATGCTCGTCTCTCA GATGCTCGTCGGCGGGGTCATGGCGGCGGAGCTGGGGGACCACGGCGGGATCGGGAAGCAGTACGCCGTGGTCGTGATCATACTGATAAGCAACTACGTG GCGGGATTCGGACTATCGTGGGGCCCACTGGGGTGGCTAGTTCCCAGCGAGATTTTCCCGATGGAGATTCGGTCGGCGGGGCAGAGCATTGTGGTGGCGG TGAGTTTCCTGTTCACGTTTATTGTGGCGCAGTCGTTTTTGGAGATGCTCTGTCATTTTAAGGCGGGGATCTTCTTCTTCTTTGGAGGGTGGGTGGTTGT TATGACGGTGTTTGTTTACTTGTTGTTGCCGGAGACGAAGGGGGTCCCGATTGAGAAGATGGATGAGGTTTGGACGGAGCATTGGTTTTGGAGTAGAATT GTTGGCGGGAGTGGTCCGCCGGTGGGCGGGGGAATCCCGGGCGGCGGAGTCCGGTGA
AA sequence Show only first row Show all	>Lus10009656 pacid=23140038 polypeptide=Lus10009656 locus=Lus10009656.g ID=Lus10009656.BGIv1.0 annot-version=v1.0 MAVEALSTKNDESLYHYNGRITFFVALSCMMAAMGGVIFGYDIGISGGVTSMEPFLEKFFPEVVTKMKHDAKVSNYCKFNSELLTSFTSSLYIAGLVASF FASWITKSHGRRPSILAGGAAFLAGAALGAAATNVYMLIIGRVLLGIGVGFSNQSVPLYLSEMAPARLRGAVNNGFQLSIGIGVMAANLINFGTEKIRAG YGWRISLGMAAVPAAILTVGAIFLPETPSSVIQRTNDREKARKVLEKIRGTSEIESELEDLTIASQISNSISTHNQFRTIIKIKYRPQLVMAIAIPFFQQ VTGINVIAFYAPLLFRTIGMGESASLMSAVLTGAIGILTTFLSMLIVDRMGRRKLFLIGGIQMLVSQMLVGGVMAAELGDHGGIGKQYAVVVIILISNYV AGFGLSWGPLGWLVPSEIFPMEIRSAGQSIVVAVSFLFTFIVAQSFLEMLCHFKAGIFFFFGGWVVVMTVFVYLLLPETKGVPIEKMDEVWTEHWFWSRI VGGSGPPVGGGIPGGGVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61520			Major facilitator superfamily ...		Lus10009656 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10035620 [exp]	3.5	0.8007
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	4.7	0.7805
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	16.2	0.7517
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	17.6	0.7532
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	21.2	0.7308
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	21.2	0.7476
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10002217 [exp]	21.7	0.7536
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	29.9	0.7073
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	31.7	0.7113
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	37.5	0.6820

Compare expression of checked genes

Lus10009656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.