Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61510 123 / 3e-33 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009018 [exp] 102 / 4e-25 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233800 [exp] 117 / 9e-32 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G140600 [exp] 116 / 2e-31 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G373200 [exp] 44 / 3e-05 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 43 / 5e-05 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009657 pacid=23140062 polypeptide=Lus10009657 locus=Lus10009657.g ID=Lus10009657.BGIv1.0 annot-version=v1.0 ATGGCAATTTACAAATTGAACCGTTTCGGAAATTGGCGGGTCCTAGTAGGGTCGGCCAACTCCAGTCCGATGGAGCTGACAGTGAAGTGCCAAAGTCAAA CTCTGCTTCCGCCAACGACACCACTTCATCATCTCCTTCGTCTTCCACATCATTCTCGAAGGGCAACCACTTCGCTTCGTTCCTCTACTTCGTCTGCGAA CCATCGAACATTGATTGCAAGAGCTCACCGATCATCATCATCATCATCATCAATAGCAGCGGGAACCGATTCGATCGCGGAGATGGTGAAGGCGATGCGG GTTTACGAGCTCGGCGGTCCCGAGGTACTGAAGTGGGAGGATGTGGAGATAGGGCAGCCGAAGGAAGGCGAAATTAGGGTTAAGAACAAGGCTGTTGGGC TTAACTTCATTGATACTTACTTCCGCAAAGGTGTTTACAAAGCTGCCAGTATGCCGTATACGCCAGGTGGGGAATTTGTGTTGAAATTGAAACCGGCCAT TGCTTTTGGTTCCATTGCTGTCTTGAAGTCGAGTAGTGAGACTGTGAATTGTATATTTTGCAGGCATGGAGGCTGTGGGGGAGGTGATAGCTGTGGGAAA TGGAGTGAGTGA
AA sequence Show only first row Show all	>Lus10009657 pacid=23140062 polypeptide=Lus10009657 locus=Lus10009657.g ID=Lus10009657.BGIv1.0 annot-version=v1.0 MAIYKLNRFGNWRVLVGSANSSPMELTVKCQSQTLLPPTTPLHHLLRLPHHSRRATTSLRSSTSSANHRTLIARAHRSSSSSSSIAAGTDSIAEMVKAMR VYELGGPEVLKWEDVEIGQPKEGEIRVKNKAVGLNFIDTYFRKGVYKAASMPYTPGGEFVLKLKPAIAFGSIAVLKSSSETVNCIFCRHGGCGGGDSCGK WSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	0	1
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	1.0	0.9715
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	2.0	0.9562
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	3.5	0.9540
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	3.7	0.9427
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	5.2	0.9394
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	5.3	0.9512
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	5.7	0.9418
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	6.7	0.9480
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	8.5	0.9480
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	9.4	0.9247

Compare expression of checked genes

Lus10009657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.