Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61510 404 / 4e-142 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 114 / 2e-30 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT1G49670 99 / 1e-23 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G56460 73 / 6e-15 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT5G63620 64 / 7e-12 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT1G26320 60 / 2e-10 Zinc-binding dehydrogenase family protein (.1.2) AT5G16980 59 / 3e-10 Zinc-binding dehydrogenase family protein (.1.2) AT5G16970 57 / 2e-09 AT-AER alkenal reductase (.1) AT5G37980 56 / 3e-09 Zinc-binding dehydrogenase family protein (.1) AT5G37940 56 / 5e-09 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009018 [exp] 448 / 4e-156 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10018450 [exp] 118 / 1e-31 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10011233 [exp] 117 / 3e-31 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10027904 [exp] 94 / 1e-21 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10002406 [exp] 92 / 2e-21 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10028988 [exp] 77 / 3e-16 AT3G56460 508 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10003691 [exp] 74 / 3e-15 AT3G56460 504 / 1e-180 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10007832 [exp] 63 / 3e-11 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 62 / 5e-11 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233800 [exp] 414 / 2e-147 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G140600 [exp] 400 / 7e-142 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 114 / 4e-30 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.009G103000 [exp] 102 / 6e-25 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.019G065700 [exp] 85 / 5e-19 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.007G143600 [exp] 60 / 3e-10 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002500 [exp] 59 / 3e-10 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1) Potri.010G177700 [exp] 59 / 4e-10 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.007G143800 [exp] 58 / 8e-10 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 56 / 7e-09 AT5G16970 495 / 2e-177 alkenal reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10009658 pacid=23140063 polypeptide=Lus10009658 locus=Lus10009658.g ID=Lus10009658.BGIv1.0 annot-version=v1.0 ATGGGGTCTTATGCAGAAGAGCAGATACTCCCTGCAGATAGAGCTGTACCTGTTCCTGCTTCAATTGATCCGGTTGTGGCAGCTTCGGTTTTGCTCAAGG GGATGACTGCTCAGTTCCTGTTAAGACGATGTTTCAGGGTTGAGCCGGGACACACTATCCTAGTTCATGCAGCAGCTGGAGGAGTTGGGTCTCTGCTGTG CCAGTGGGCAAATTCCCTTGGTGCTACTGTTATCGGAACAGTTTCAACCAAGGAGAAAGCTGCACAAGCCAAAGAAGATGGATGCCACCATGTTATAAAC TACAAAGAAGAAGACTTTGTCGCCCGTGTCAACAAGATAACTTCAGGCAATGGGGTCAATGTCGTCTACGATTCTGTCGGAAAGGACACAGTTCAGGGGT CGCTGTCCTGCTTAAAGATTCGAGGATACATGGTGGTGTTCGGGCAGTCATCAGGAACACCCGATCCAATCCCTCTATCCGCCCTCGCTCCAAAGTGCTT GTTCCTGACGAGGCCTTCCCTCATGATGTACACCGTGACCCGGGATGAGCTGCTCGAAACTGCTGCTGATGTGTTCGCCAACATGGCTTCCGGAGCTCTC AAAGTTCGGGTAAACCACACGTACCCTTTGTCCGAAGCTGCCAACGCTCACTCGGACTTGGAGATCCGGAAGACCTCCGGTTCCGTTGTGTTGATTCCCT GA
AA sequence Show only first row Show all	>Lus10009658 pacid=23140063 polypeptide=Lus10009658 locus=Lus10009658.g ID=Lus10009658.BGIv1.0 annot-version=v1.0 MGSYAEEQILPADRAVPVPASIDPVVAASVLLKGMTAQFLLRRCFRVEPGHTILVHAAAGGVGSLLCQWANSLGATVIGTVSTKEKAAQAKEDGCHHVIN YKEEDFVARVNKITSGNGVNVVYDSVGKDTVQGSLSCLKIRGYMVVFGQSSGTPDPIPLSALAPKCLFLTRPSLMMYTVTRDELLETAADVFANMASGAL KVRVNHTYPLSEAANAHSDLEIRKTSGSVVLIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	0	1
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	1.0	0.9715
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10006708 [exp]	1.7	0.9511
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	2.6	0.9431
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	3.5	0.9516
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	3.5	0.9447
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	3.7	0.9334
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	4.2	0.9270
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10007757 [exp]	4.5	0.9447
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000532 [exp]	4.7	0.9233
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	6.0	0.9347

Compare expression of checked genes

Lus10009658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.