Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51330 271 / 8e-81 DYAD, SWI1 SWITCH1 (.1) AT5G23610 140 / 3e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009021 [exp] 988 / 0 AT5G51330 370 / 3e-119 SWITCH1 (.1) Lus10009661 [exp] 50 / 4e-06 AT3G48810 440 / 3e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009023 [exp] 48 / 3e-05 AT3G48810 543 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106800 [exp] 314 / 5e-95 AT5G51330 432 / 6e-141 SWITCH1 (.1) Potri.001G126901 [exp] 300 / 1e-89 AT5G51330 413 / 6e-134 SWITCH1 (.1) Potri.004G137000 [exp] 179 / 4e-48 AT5G23610 276 / 1e-86 unknown protein Potri.T012300 [exp] 160 / 6e-42 AT5G23610 257 / 2e-79 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009659 pacid=23140084 polypeptide=Lus10009659 locus=Lus10009659.g ID=Lus10009659.BGIv1.0 annot-version=v1.0 ATGGCGGACAACCGCCGCTCTTACTTCCCCGCCATGACCTCATTTCTGCAATCCCCGCCGCCGCCTCCGCCATTGTTACTAATGGAGAATTCACCGGCTG ATGCTCAAGATCCTTCAGAGCACATTAGAGTAGGAGGTTTCTATGAAGTAGATCACTCGATGCTTCCGAGCAGATATCCGGATCAGCTCAAGTGTGTCCG GGTTGTCATGGTCTGTTTGAAAAAAGGAGCTCTGATTCCGTTCTGCGTGTTTATGATCTTGCAGGTTATTGAGAAAACGAGGATGCGAGTTTCACTGAGG TATCCGAGCATATACTCTGTCCAGGATTACTTCAGCGACGGCAGCGGATGTTCGGTGGCGGAGGTGAAGAACATCCCGGCGCTGGTGGAGAAGTGTATGA TCGGATCGGAAGTGGCGGCGGAGGCGCTGTATCGGAGGATTTCAACGGCTGAGGTGGCGGAGAGAAAGAAAAGGTGGAATTTCTGGGTGGTTCCTTCTAT TGATCCCCGTCAGAATGTTTCGGTTGTGAAATCATCTAAAAGTAACTGTTCGTCGCTCTTGTCGGAGCTCAAGACTTCCCGGATAGCCGATTGGGGGCTA CGCCGGAGGGTTAGGTTCTTGATTCGGCGTGAGGAGGAGCAGAAGCAAGAACGAGCTACTGATATTACTGAGGAGGAAGAAGAAGAAGAAGAAGAAAAGG ATGATGCTGTCGAAGAGAATGAAGAGGAAGACGAAGAGGAGGAGAATCAGGCACGGAAGCGGATGAATGGATCGTCATCAACAGTCCAGCTGAGGAAGAG GCCGAAACAAGAGAAGAAGAATCAGATTGTGGTTTACAGGCCGAAGAAGAAGAAAGTGGTGAAGAATTCGATCGATCGATGGTCTGCTGTAAGGTACAAA ACGGCTGAGATCAACATGCTGAAGATAATGATAGAAGAAGGGATAGGGTTTGGGAATCCGATTTTGAGGGCGGAGTTGAGAGCAAAAGCCAGGAAGATGA TCGGAGATACAGGTCTGCTGGACCATCTACTGAAACACATGGCAGGGAAAGTGGCTCCAGGCGGTGAAGTGAGGTTCAGGAGGAGGCACAATGCTGAAGG TTCAATGGAGTATTGGCTGGAGAAGGCTAATTTAGTTGATATAAGGAAGGAAGCTGGAGTTGCAGATCCTTACTGGATTCCTCCGCCTGGGTGGAAGCCT GGTGATAATCCTTCTCAGAACCCTGTCTGTGCCGCCCAGATCAAGCAACTCAAGGAAGAGATCGAGAAACTGAGAAGAAGCATTGAAGAACAGAGATCGA GGAAGGACGAACTAGCTGCTGTGACCACTCCAATTTCATCAGTTACCAGCTTAAGCATTGAGCATGAAGGGTTTCGAATTCCACTCCAGGAAATTTTCAT TAATCTTACAAACAAGAAGGCCAAGATCGAGGAACAACTGGCAGATATCTCCAAGTCATTATCTGCTATGGAGGAAAAAATTGCTGCAACGAAGAGATCA GAAGAAGGGAAAGAGACACAAATCGGAAGTCTGCAAAGCGGGTTCAGGATATACAATCCTGGTAATTCGAGCTACTTACTGCCAAGCATGGCGATTTCCT ACTCTCCACAAATCCAGCTCGACCGAGGACTTGTTTTCACTCCTCCTTCCGCCTCATCATCGTCCACTGTTATATTTCCGCCGCCGCTGCAGTATTCATC TTCGCCGCCGGTGATGAGGCCATTGGCTGAGAGAAGAGCTCTGACTATGAATGTTCCTTCGATCCTTGCCAGAACTCCTAGAAGTAGTACTCCACTAATC AACCTGAATGAAGATCCCAGCTGTCAAAGCGACACCGTGTTGTCGTCGTCTCAGAGTCATCGCCATGTCTCTCCCCGCCCTGTCGATTACCAGAGAAGAA ACCATCAGACTCTGACCGCTTCCATCTCCTCCACTTTGGCTGCTGCAAATGAGAGAGCCCATGGATCAAATCAAAGAGACAGACGAAGCAGGTACAGAGC TGCCTCTTCATCCTTATCTATGGGAGCTTCATCAAGCTTGCCGGCCGGAGTACAAGCATGGCTGGCCGTCGGTGAGCCGGATCAGTCGCCGGACGAAGTT TCCAATCGAGTCGGTGAGCCGAAACAATCGGTTTGTGGGATCGGTTGGATTGCGAACCGAATGCGGTCTTGTACAACGCTCTCATCCACTGTCCCTCCTC TTATGACCTACTGCTGGACGGTCTACTCAGATCGGAGCGGACGAAAGAAGCGCTCGAGCATTTAG
AA sequence Show only first row Show all	>Lus10009659 pacid=23140084 polypeptide=Lus10009659 locus=Lus10009659.g ID=Lus10009659.BGIv1.0 annot-version=v1.0 MADNRRSYFPAMTSFLQSPPPPPPLLLMENSPADAQDPSEHIRVGGFYEVDHSMLPSRYPDQLKCVRVVMVCLKKGALIPFCVFMILQVIEKTRMRVSLR YPSIYSVQDYFSDGSGCSVAEVKNIPALVEKCMIGSEVAAEALYRRISTAEVAERKKRWNFWVVPSIDPRQNVSVVKSSKSNCSSLLSELKTSRIADWGL RRRVRFLIRREEEQKQERATDITEEEEEEEEEKDDAVEENEEEDEEEENQARKRMNGSSSTVQLRKRPKQEKKNQIVVYRPKKKKVVKNSIDRWSAVRYK TAEINMLKIMIEEGIGFGNPILRAELRAKARKMIGDTGLLDHLLKHMAGKVAPGGEVRFRRRHNAEGSMEYWLEKANLVDIRKEAGVADPYWIPPPGWKP GDNPSQNPVCAAQIKQLKEEIEKLRRSIEEQRSRKDELAAVTTPISSVTSLSIEHEGFRIPLQEIFINLTNKKAKIEEQLADISKSLSAMEEKIAATKRS EEGKETQIGSLQSGFRIYNPGNSSYLLPSMAISYSPQIQLDRGLVFTPPSASSSSTVIFPPPLQYSSSPPVMRPLAERRALTMNVPSILARTPRSSTPLI NLNEDPSCQSDTVLSSSQSHRHVSPRPVDYQRRNHQTLTASISSTLAAANERAHGSNQRDRRSRYRAASSSLSMGASSSLPAGVQAWLAVGEPDQSPDEV SNRVGEPKQSVCGIGWIANRMRSCTTLSSTVPPLMTYCWTVYSDRSGRKKRSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Lus10009659 [exp]	0	1
AT3G57500			unknown protein		Lus10012197 [exp]	2.6	0.6641
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10035044 [exp]	9.4	0.6253
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10009928 [exp]	14.4	0.6032
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020588 [exp]	17.5	0.5491
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	33.8	0.6012
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	38.4	0.5766
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	52.2	0.5205
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10001298 [exp]	54.0	0.5018
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10043032 [exp]	64.5	0.4792
					Lus10035468 [exp]	79.6	0.5110

Compare expression of checked genes

Lus10009659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.