Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35920 889 / 0 RNA helicase family protein (.1) AT5G04895 540 / 2e-176 DEA(D/H)-box RNA helicase family protein (.1) AT2G01130 538 / 5e-176 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 526 / 2e-170 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G58060 354 / 6e-105 RNA helicase family protein (.1) AT1G58050 339 / 1e-99 RNA helicase family protein (.1) AT1G06670 207 / 4e-55 NIH nuclear DEIH-boxhelicase (.1) AT2G30800 207 / 5e-55 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G27900 144 / 1e-35 RNA helicase family protein (.1) AT1G32490 138 / 3e-33 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009022 [exp] 1117 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10034126 [exp] 540 / 2e-176 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 537 / 9e-176 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10043459 [exp] 538 / 1e-175 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 535 / 1e-173 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10007938 [exp] 531 / 1e-172 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 525 / 2e-170 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037145 [exp] 214 / 1e-57 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10036783 [exp] 211 / 2e-56 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068900 [exp] 946 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G246000 [exp] 580 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 551 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G117800 [exp] 533 / 2e-173 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 533 / 3e-173 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.004G222900 [exp] 348 / 8e-103 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.015G008700 [exp] 231 / 4e-63 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.015G024400 [exp] 218 / 1e-58 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 215 / 1e-57 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.005G206500 [exp] 209 / 9e-56 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10009660 pacid=23140067 polypeptide=Lus10009660 locus=Lus10009660.g ID=Lus10009660.BGIv1.0 annot-version=v1.0 ATGTGTATTTCTCTTGTTCAGTTGGAGGTGCTCGATGAGAATGAATGGTGGAGTAAGATTGAGCAAATGAAGAGCGGGAGGGAGCAGGAGATGATCGTAA AACGGAGTTTCAGCCGTGCTGACCAGGAAAAACTGTCGGGCATGGCTTATCAATTAGGTCTTCACTTCCATGCATATAACAAAGGGAAGACACTGGTGGT TAGCAAAGTTCCACTACCTAATTATAGGGCAGATCTCGATGACCGTCATGGCTCGACTCAGAATGAGATTCGAATGTCCACTGAGACTGAGCGGAGGGTT GGAAGCCTTTTAGGCAACTCACAAAGCCCGGTTCCTGGCAATGGTTCCGGTTCAACTTATCCCCATGACTCCGCACAATCATCAAGGACAGTGAAAGTAA CAAAACCCATATCTGTCCCATCGCAAAAAGATTCTGCCCAGGAGAAACTTAGTCTGGAATTAAAGCAGAAGCAGGATGAGCTCAAGGCAAGCAATGGTGT GAAGGAGATTCAATCTTTTAGAGAAAAGCTGCCTGCATTTAAGGCCAAAGCTGAATTCCTAAAAGCTGTTACAGAGAATCAGGTACTTGTAATTTCTGGA GAGACAGGTTGTGGCAAAACAACTCAGCTTCCACAATACATATTAGAGGAGGAGATATCTGCACTTCGAGGTGGTACTTGCAGCATTATTTGCACACAAC CTCGCCGTATATCTGCAATATCTGTTGCTGCCCGAGTATCATCTGAAAGAGGAGAGACGCTTGGTGAAAGTGTTGGTTATCAAATTCGCCTTGAATCAAA GCGATCGGCTTTAACTAGGCTTCTATTCTGCACTACCGGTGTGCTGTTGAGACAGTTGGTTCAGGATCCAAATTTAACTGGCGTCACACATTTGTTAGTA GATGAAATTCACGAGAGAGGCATGAACGAGGATTTTTTATTGATTATTTTACGTGATCTTCTTCCTCGTAGACCAGACTTACGACTCATTCTAATGAGTG CCACAATCAATGCTGACTTATTCTCAAAGTACTTTGGAAATGCACCAACAATTCATATACCGGGATTCACCTTTCCTGTAGCAGAGTTCTTTCTAGAGGA TCTCCTGGAGAAAAGCCATTACAAGATACAATCCGAGTCTGAAAATATGCAAGGAAATTCAAGAAGACCAAGAAGAAGAAGAGATCAAGAATCAAAGAAA GATCCATTGACGGAATTATTTGAGGACATTGACATTGATTCTCACTACAAGAATTACAGTGCTTCTACGCGGCTTTCCCTTGAAGCTTGGACGGGTTTGC AGCTTGACTTGGGTCTGGTCGAGGCCAACATTGAATATATATGCCGTAGTGAAGGTGATGGTGCAATTCTTGTTTTTCTTACTGGATGGGATGAAATTTC CAAGCTACTAGACAAAATTAAAGGAAACAGACTTCTAGGAGACCAAAGCAAGTTTTTAGTGCTTCCCTTGCATGGTTCAATGCCTACAATCAATCAACGC GAGATTTTTGACCGCCCTCCCCCCAACAAACGAAAAATCGTTCTTGCAACAAATATTGCAGAGAGTAGTATCACCATCGATGATGTTGTGTATGTTATAG ACTGCGGAAAAGCAAAGGAAACCAGCTATGATGCTCTAAACAAGCTGGCTTGCCTCTTACCAAACTGGATTTCAAAGGCTTCAGCACACCAGAGACGTGG TCGTGCTGGTCGTGTACAACCAGGGGTTTGTTACAGACTATATCCGAAAGTTATCCATGATGCGATGCTTCAGTATCAATTACCTGAAATTCTGCGGACG CCTTTGCAAGAGTTGTGCCTCCATGTTAAAAGTTTGCAGCTTGGAGCTGTTGGATCTTTCCTTGAGAATATTCTCGACGGCCTTTGTTGCAGTGACCACA TTGCTCTTGTTAAAGCCTTTGAAGGGTACAGAGAAGCCAAGCGTACACGAAGTGAGAGATCATTTTGTTGGGAGAACTTTCTATCACCCGTGACTCTACG GATGATGGAAGAAATGAGGGAGCAGTTTCGTGTCTTACTGACAGACATCGGCTTTGTCGACAAATCCAAGAGCAATGGTGCTTTCAACCAATACAGTCAA GATATGGAAATGGTATCGGCCGTCTTATGTGCTGGGCTATACCCAAAAGTTGTACAATGCAAACGGAGAGGAAAGCGCAGTGCATTCTACACGAAAGAGG ACGGGAAGGTCGACATCCATCCGGCGTCTGTAAATGCAGGAGTCCACCTCTTCCCATTACCATACTTGGTTTACAGCGAAAAGGTGAAAACAACTGGGAT TTACGTTCGGGATTCAACAAATATATCAGACTATGCATTGCTCCTGTTCGGAGGTAGTCTCACTCCCAGCAAGAACGGCGACGGCATTGAGATGCTTGGC GGGTACCTTCATTTCTCTGCATCGAAGAGTGTGCTGGATTTGATTCGGAAACTGCGTTTGGAGTTGGACAAGCTCCTGAGTAGGAAGATTGAAGACCCTG GTCTCGACATGTCGGCAGAGGGAAAAGCCGTCGTCTCTGCTGCGGTGGAGTTACTCCACAGTTGTGACGTGCGCTACTGA
AA sequence Show only first row Show all	>Lus10009660 pacid=23140067 polypeptide=Lus10009660 locus=Lus10009660.g ID=Lus10009660.BGIv1.0 annot-version=v1.0 MCISLVQLEVLDENEWWSKIEQMKSGREQEMIVKRSFSRADQEKLSGMAYQLGLHFHAYNKGKTLVVSKVPLPNYRADLDDRHGSTQNEIRMSTETERRV GSLLGNSQSPVPGNGSGSTYPHDSAQSSRTVKVTKPISVPSQKDSAQEKLSLELKQKQDELKASNGVKEIQSFREKLPAFKAKAEFLKAVTENQVLVISG ETGCGKTTQLPQYILEEEISALRGGTCSIICTQPRRISAISVAARVSSERGETLGESVGYQIRLESKRSALTRLLFCTTGVLLRQLVQDPNLTGVTHLLV DEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTIHIPGFTFPVAEFFLEDLLEKSHYKIQSESENMQGNSRRPRRRRDQESKK DPLTELFEDIDIDSHYKNYSASTRLSLEAWTGLQLDLGLVEANIEYICRSEGDGAILVFLTGWDEISKLLDKIKGNRLLGDQSKFLVLPLHGSMPTINQR EIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPNWISKASAHQRRGRAGRVQPGVCYRLYPKVIHDAMLQYQLPEILRT PLQELCLHVKSLQLGAVGSFLENILDGLCCSDHIALVKAFEGYREAKRTRSERSFCWENFLSPVTLRMMEEMREQFRVLLTDIGFVDKSKSNGAFNQYSQ DMEMVSAVLCAGLYPKVVQCKRRGKRSAFYTKEDGKVDIHPASVNAGVHLFPLPYLVYSEKVKTTGIYVRDSTNISDYALLLFGGSLTPSKNGDGIEMLG GYLHFSASKSVLDLIRKLRLELDKLLSRKIEDPGLDMSAEGKAVVSAAVELLHSCDVRY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35920			RNA helicase family protein (....		Lus10009660 [exp]	0	1
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	2.2	0.9007
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	4.9	0.8424
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	8.6	0.8661
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	9.5	0.8441
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	12.0	0.8544
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	14.4	0.8612
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	15.1	0.8640
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	15.9	0.8363
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	17.3	0.8087
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	20.8	0.8536

Compare expression of checked genes

Lus10009660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.