Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48810 439 / 5e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 199 / 2e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 191 / 8e-54 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 189 / 1e-52 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 185 / 1e-52 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G09060 186 / 7e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G79540 182 / 4e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 180 / 3e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 176 / 3e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 175 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009023 [exp] 838 / 0 AT3G48810 543 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 207 / 6e-59 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 193 / 1e-54 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 186 / 4e-52 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 187 / 3e-51 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 185 / 4e-51 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 181 / 1e-49 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 176 / 3e-48 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 177 / 6e-48 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148700 [exp] 506 / 4e-175 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 194 / 7e-55 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 188 / 8e-53 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 189 / 1e-52 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 187 / 1e-52 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 186 / 3e-52 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 186 / 3e-52 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 184 / 9e-52 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 182 / 8e-51 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 183 / 9e-51 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009661 pacid=23140071 polypeptide=Lus10009661 locus=Lus10009661.g ID=Lus10009661.BGIv1.0 annot-version=v1.0 ATGTATCTGAAAGAAGGACGACGCTCTCTGTTATTAACCTCGAAATCCTGCACACGATCGCTTCCATTTGCCATCAAAGAATCCGAGGTGCTGAACAAGT TAGAGAACGAGCCAAGCACCTCACTCACTCTAGATTACTTCAAGTCGATTACCGATTCGAAATCCTTCAAACAAACTGGTCTCACCTACAGAACCATGAT CCGACGGCTGGGCGATTCCGGCGACGTCGACCGAATCCAGAGCCTCCTTCAGCAGATGAAGCTGGAAGGAATCTCTTGCTGTGCAGATTCGTTTGTGAAT CTGATAAACACTTGTGTAAAATCAGGCTCGGCCGAACAGGCGTTGAAGATGCTCTATAGGATCGACGAATTCGGATGTAGGCCGACTGTCAAAATGTACA ATCTGATCCTGGACGCTTTGCTTGGCGAGAACAGGTTCGAGATGGTCAGTTCGACTTACAGGAACATGAAGGCCGATATGATCGAGCCGAATGTGTATAC TTACAATACGCTGTTGAAGGCTCTCTGTAAGAACAATCGAATCGAGGTGGCTCGAAATCTGCTCTTACAAATGTCGAGCAAAGGTTGTTTCCCCGATGAT GTTAGCTATACTATTGTAATGTCGTGTATGTGTGATGGAGGCATGGTGGAGGAAGCGTATCAGGAGCTCGAGATGAGATCATCGAGTTTGTTCCGGTTTC GGCCACCTGTGCCTGCTTATAATGCTGTGATGAAAGGTTTCAGGAAGGAAGGTAGAGTTAGGGAGGTGGTTCGGTTGTTGAATCGAATTACGGAAGTTGG ATTGGTTCTGAATGTGGTTACTTACTCGACTGTTATAAGCTCGCTTTCGAACGCGAGGAATGTTGACCTCGCGTTTGCTGTGTTCGGTAAGATGTTTGTG AGAGGGTGCAGCCCGAATCTCCACACGTTCTCTTCGTTGATGAAAGGGTGTTTTGTGGAAGGGAGGGTAACCGAAGCGCTCGGTTTGTGGAATCGGTTGG ATCTTGAACCGAATGTTGTTTTGTACAACACTCTTATCCATGGTCTCACCTCTCATGGCAGGATGGTTGAAGCAGTTTCTGTCTTCGAAGATATGCTACG GAATAGCAGATGTTCTCCGAGCATTGCAACGTACGGTGCTCTAATCGACGGATTTTCAAAATCGGGGGATCTACGTGGCGCAACCGAGACATGGAACAAG ATGATGGCCGACAAGGGATGTGTTGACCTGGTCAACGTCGTTGTTTATACATCCATGGTGGATGCTCTCTGCAGAAACTCGATGTTCGACGAAGCGTACG CTCTTATAGAGCGTATGAGACGATCGAGCTGCCATCCGAATACGGTTACGTTCAATACATTGATCGGAGGTTTGAAACCTTAG
AA sequence Show only first row Show all	>Lus10009661 pacid=23140071 polypeptide=Lus10009661 locus=Lus10009661.g ID=Lus10009661.BGIv1.0 annot-version=v1.0 MYLKEGRRSLLLTSKSCTRSLPFAIKESEVLNKLENEPSTSLTLDYFKSITDSKSFKQTGLTYRTMIRRLGDSGDVDRIQSLLQQMKLEGISCCADSFVN LINTCVKSGSAEQALKMLYRIDEFGCRPTVKMYNLILDALLGENRFEMVSSTYRNMKADMIEPNVYTYNTLLKALCKNNRIEVARNLLLQMSSKGCFPDD VSYTIVMSCMCDGGMVEEAYQELEMRSSSLFRFRPPVPAYNAVMKGFRKEGRVREVVRLLNRITEVGLVLNVVTYSTVISSLSNARNVDLAFAVFGKMFV RGCSPNLHTFSSLMKGCFVEGRVTEALGLWNRLDLEPNVVLYNTLIHGLTSHGRMVEAVSVFEDMLRNSRCSPSIATYGALIDGFSKSGDLRGATETWNK MMADKGCVDLVNVVVYTSMVDALCRNSMFDEAYALIERMRRSSCHPNTVTFNTLIGGLKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009661 [exp]	0	1
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10040741 [exp]	1.4	0.7169
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	15.2	0.5821
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	50.4	0.5334
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	60.5	0.5292
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	69.5	0.5243
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	69.7	0.5129
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10009072 [exp]	97.2	0.5070
AT3G01570			Oleosin family protein (.1)		Lus10028035 [exp]	101.5	0.4573
					Lus10035468 [exp]	136.8	0.4959
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10036921 [exp]	148.2	0.4864

Compare expression of checked genes

Lus10009661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.