Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23340 358 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51310 336 / 2e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G50960 147 / 2e-41 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT1G80330 132 / 1e-35 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT4G21200 131 / 2e-35 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT2G38240 127 / 1e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 122 / 8e-32 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G52820 119 / 4e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 119 / 7e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G19010 119 / 8e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018836 [exp] 325 / 7e-111 AT5G51310 348 / 7e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10009025 [exp] 276 / 1e-92 AT5G51310 131 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021002 [exp] 134 / 3e-36 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10007640 [exp] 129 / 2e-34 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10015016 [exp] 127 / 1e-33 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030567 [exp] 126 / 2e-33 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 126 / 2e-33 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10016659 [exp] 125 / 2e-33 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 126 / 8e-33 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106900 [exp] 398 / 1e-139 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G159500 [exp] 383 / 1e-133 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G128100 [exp] 370 / 1e-128 AT4G23340 458 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G418200 [exp] 133 / 4e-36 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 133 / 4e-36 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 133 / 4e-36 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G201000 [exp] 132 / 1e-35 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G096800 [exp] 131 / 2e-35 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.015G002800 [exp] 130 / 5e-35 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176600 [exp] 130 / 7e-35 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10009663 pacid=23140019 polypeptide=Lus10009663 locus=Lus10009663.g ID=Lus10009663.BGIv1.0 annot-version=v1.0 ATGTCTCAATCTGCGACTGTAAAGCTCCCTGTGTTCGACATCTCGGTCCCGTTCTCGAAATCGGCCATTGATGACCTCTCCGCAGCTTGCAAGGAGTGGG GGTTCTTCCACATAACCAACCATGGAGTTTCCAAGGAGCTCTACAGCAAGGTCAGAGCTTTCTCCTTGGAGGATCTCTTCTCTCAGCCTTTGGAGATGAA GATCAGAGCTGGACCGAGCTCCGATGTCAAGTCCTACACTCCGCATTTCATCGCTTCGCCTTTCTTCGAGAGCTTTCGCGTCTCCGGTCCCGGTTTTTTG GATTCTGTTCATGAATCGGTTCGAGTGGTCCGTGGTCCGGTTTCAAGCTATCCAGAATTAAGTCAAGTAGTGGAAGAGTACGGGAAGAAAATGACGAATC TATCTGAAACCATAGTAAAAACCATCCTCGCAACCATGAGTAAGGAATTGGTGGAGAAATTGTACATTTCCCACTTCAAAGACTGCCATGGATACCTAAG AATCATCAATTACTCCCCACCAAACCCACATCAAGAAGAACAAGAAGTTGAAGGGCTCGGGATGCACACAGACATGAGCTGCGTGACCATAGTATGCCAG GACGAGATCGGGGGGCTACAGGTTCGAACAAAAGAAGGGAAGTGGATGGACATCGAGCCACGACCCGATTCACTCGTGGTGAACATCGGAGACATGTTGG AAGCTTGGAGCAATGGGGAGCTGAGATCATCCGAACACAGGGTTGTGCTGAAGAAACCTGTCGAAAGGTTCTCTTTGGCATTTTTCTGGTGCTTTGAGGA CCAAAAGGTAATTTTGGCGCCCGAGGAGGTTGTAATTGGGAAGAGGAGAAAGTATAGGGAGTTTGTTTGTAAAGAGTATTTGAGTTATAGAGAGACTAGT GTTAAGGGGAGGTTTGATAAGGTTGGGTTCACTGTTAGGGATTTCGCTGCACTCGATGGATCGATCGTAAATTCGTGA
AA sequence Show only first row Show all	>Lus10009663 pacid=23140019 polypeptide=Lus10009663 locus=Lus10009663.g ID=Lus10009663.BGIv1.0 annot-version=v1.0 MSQSATVKLPVFDISVPFSKSAIDDLSAACKEWGFFHITNHGVSKELYSKVRAFSLEDLFSQPLEMKIRAGPSSDVKSYTPHFIASPFFESFRVSGPGFL DSVHESVRVVRGPVSSYPELSQVVEEYGKKMTNLSETIVKTILATMSKELVEKLYISHFKDCHGYLRIINYSPPNPHQEEQEVEGLGMHTDMSCVTIVCQ DEIGGLQVRTKEGKWMDIEPRPDSLVVNIGDMLEAWSNGELRSSEHRVVLKKPVERFSLAFFWCFEDQKVILAPEEVVIGKRRKYREFVCKEYLSYRETS VKGRFDKVGFTVRDFAALDGSIVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Lus10009663 [exp]	0	1
AT3G29034			unknown protein		Lus10033010 [exp]	1.0	0.9393
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	2.4	0.9341
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	2.4	0.9388
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022065 [exp]	6.5	0.9171
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005773 [exp]	8.2	0.8644
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	10.0	0.9195
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	12.2	0.9180
					Lus10033372 [exp]	14.1	0.8971
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10021395 [exp]	16.7	0.8881
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	17.7	0.9151

Compare expression of checked genes

Lus10009663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.