Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61500 568 / 0 ATATG3 autophagy 3 (APG3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009026 [exp] 641 / 0 AT5G61500 562 / 0.0 autophagy 3 (APG3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107000 [exp] 567 / 0 AT5G61500 568 / 0.0 autophagy 3 (APG3) (.1) Potri.001G126500 [exp] 556 / 0 AT5G61500 542 / 0.0 autophagy 3 (APG3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0097 [flax] [poplar] TypeIII_Chap PF03987 [flax] [poplar] Autophagy_act_C Autophagocytosis associated protein, active-site domain
Representative CDS sequence Show only first row Show all	>Lus10009664 pacid=23140109 polypeptide=Lus10009664 locus=Lus10009664.g ID=Lus10009664.BGIv1.0 annot-version=v1.0 ATGGTGCTGAAACAGAAGCTCCACGATGCATTCAAAGGTACGGTGGAGAGGATCACCGGACCACGCACCGTCTCCGCCTTCAAGGAGAAGGGCGTACTCA GCGTCACCGAGTTCATCCTCGCCGGAGATAATCTCGTCTCCAAGTGCCCCACCTGGTCCTGGGAATCCGGCGAGCCAAGCAAACGGAAGCCTTACTTACC TCCTGAAAAGCAGTTTCTAATCACTCGAAACGTTCCTTGTCTACGTAGAGCTGCCTCTCTCGAGAAAGAATATGAAGAAAGCGGGGGTGAGGTTTTACTT GACAATGATGATAATGACGGCTGGCTTGCGACTCATGGGACGCCAAAAGAGAAGAATGTTGGTGAAGAAGACAATGTGCCTTCAATGGAGGCCTTGGAAA TTAACCGAAAGGGTCCCATCCAAGCAATCCCATCGTACTTTGGGGATCAGGAAGAGGATGATATCCCTGATTTGGCCGATTATGATGAGTCTGACAATCT CGCTGAAGCAGATCCTGCAACTCTCCAATCTACCTATCTCGTAGCACACGAACCTGATGATGATAACATTCTGCGGACACGAACTTATGATGTCAGCATC ACTTATGACAAATATTATCAGACTCCTCGCGTATGGCTTACTGGATATGACGAGTCGAGGATGCTTTTGCAACCAGAACTAGTACTCGAAGATGTCAGTC AGGACCATGCACGTAAAACGGTTACCATCGAAGACCATCCTCATCTACCCGGGAAGCACGCTTCGGTCCATCCATGTAAACACGGAGCTGTCATGAAGAA AATCATCGATGTTCTTATGGCTCGTGGAGTCGAACCAGAAGTCGACAAGTATCTTTTCTTGTTCTTGAAATTCGTGGCATCAGTAATCCCTACCATCGAG TATGACTACACCATGGACTTCGATCTTGGCAGCTCAAGCAGCTAG
AA sequence Show only first row Show all	>Lus10009664 pacid=23140109 polypeptide=Lus10009664 locus=Lus10009664.g ID=Lus10009664.BGIv1.0 annot-version=v1.0 MVLKQKLHDAFKGTVERITGPRTVSAFKEKGVLSVTEFILAGDNLVSKCPTWSWESGEPSKRKPYLPPEKQFLITRNVPCLRRAASLEKEYEESGGEVLL DNDDNDGWLATHGTPKEKNVGEEDNVPSMEALEINRKGPIQAIPSYFGDQEEDDIPDLADYDESDNLAEADPATLQSTYLVAHEPDDDNILRTRTYDVSI TYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQDHARKTVTIEDHPHLPGKHASVHPCKHGAVMKKIIDVLMARGVEPEVDKYLFLFLKFVASVIPTIE YDYTMDFDLGSSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	0	1
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	1.4	0.9474
AT1G44770			unknown protein		Lus10034500 [exp]	2.8	0.9607
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	4.4	0.9315
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	6.9	0.9443
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	7.1	0.9453
AT1G55160			unknown protein		Lus10011503 [exp]	8.9	0.9299
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	9.5	0.9435
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	10.6	0.9346
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	11.2	0.9276
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	11.5	0.9411

Compare expression of checked genes

Lus10009664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.