Plant FIBer expression Database

Lus10009665 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18410 143 / 1e-44 Complex I subunit NDUFS6 (.1.2)
AT1G49140 141 / 7e-44 Complex I subunit NDUFS6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009027
[exp]
164 / 6e-53 AT3G18410 181 / 7e-61 Complex I subunit NDUFS6 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G056900
[exp]
157 / 4e-50 AT1G49140 181 / 7e-61 Complex I subunit NDUFS6 (.1)
Potri.015G054700
[exp]
153 / 2e-48 AT1G49140 149 / 3e-48 Complex I subunit NDUFS6 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10249 NDUFB10 NADH-ubiquinone oxidoreductase subunit 10
Representative CDS sequence
>Lus10009665 pacid=23140032 polypeptide=Lus10009665 locus=Lus10009665.g ID=Lus10009665.BGIv1.0 annot-version=v1.0
ATGGGGAGGAAGAAGGGAGTGGCGGAGTTCGATGAGTCGCCACCGGACGACTTCGATCCGGCGGATCCATACAAGGATCCGGTGGCTATGCTGGAGATGA
GGGAGCACATCGTGAGGGAGAAGTGGATCGACATCGAGAGGTCCAAGATCCTTAGGGAGAGGCTCCGGTGGTGCTACCGCGTCGAAGGTGTCAACCACCT
CCAGAAGTGCCGCCACCTCGTCGAGCAGTACCTCGACTCCACTCGCGGAATCGGATGGGGCAAGGATCACCGCCCCCCTTGCCTTCACGGTTCGTCCGAA
GGTGGAAGCGGAAGCGGCGGAGGCCGAATGAGAAGGGAAGGATCGGTTGTTTTTCAGCTGGTGAGTCTATTGTATTCTATGAATTCTGATGATGACATGG
GTGATTTGGAATTTCAGTTTATCGTAGTGTTTGATCGGCTTAAGCCTGTTTTGAAATGGAAAGTGAGCTTCTTTTGTTCACATGGCGACTTGGGTGTAAT
GATTCTTGTGGTGGAGTTTATAAGCTTGTTTGAACATCCATTTCGATAG
AA sequence
>Lus10009665 pacid=23140032 polypeptide=Lus10009665 locus=Lus10009665.g ID=Lus10009665.BGIv1.0 annot-version=v1.0
MGRKKGVAEFDESPPDDFDPADPYKDPVAMLEMREHIVREKWIDIERSKILRERLRWCYRVEGVNHLQKCRHLVEQYLDSTRGIGWGKDHRPPCLHGSSE
GGSGSGGGRMRREGSVVFQLVSLLYSMNSDDDMGDLEFQFIVVFDRLKPVLKWKVSFFCSHGDLGVMILVVEFISLFEHPFR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18410 Complex I subunit NDUFS6 (.1.2... Lus10009665
[exp]
0 1
AT3G18410 Complex I subunit NDUFS6 (.1.2... Lus10009027
[exp]
1.0 0.9574
AT1G71780 unknown protein Lus10016547
[exp]
2.0 0.9109
AT5G08060 unknown protein Lus10040513
[exp]
3.0 0.9016
AT1G77350 unknown protein Lus10028559
[exp]
4.9 0.8380
AT1G67350 unknown protein Lus10037020
[exp]
6.0 0.8765
AT3G22590 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROM... Lus10041198
[exp]
10.2 0.8558
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10023213
[exp]
11.2 0.8710
AT1G29790 S-adenosyl-L-methionine-depend... Lus10015264
[exp]
11.8 0.8412
AT5G11810 unknown protein Lus10022300
[exp]
12.1 0.8410
AT2G46800 ATMTP1, ZAT1, Z... ZINC TRANSPORTER OF ARABIDOPSI... Lus10030192
[exp]
12.2 0.8781

Lus10009665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.