Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18400 282 / 7e-94 NAC ANAC058 NAC domain containing protein 58 (.1) AT2G24430 253 / 1e-82 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT5G53950 248 / 6e-80 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G61430 241 / 1e-77 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G18270 239 / 6e-77 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT3G15170 237 / 2e-76 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G76420 234 / 5e-75 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39610 233 / 5e-75 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT5G07680 234 / 6e-75 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT3G04060 231 / 1e-73 NAC ANAC046 NAC domain containing protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009029 [exp] 525 / 0 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10038937 [exp] 286 / 1e-95 AT3G18400 268 / 5e-89 NAC domain containing protein 58 (.1) Lus10027227 [exp] 283 / 2e-94 AT3G18400 275 / 1e-91 NAC domain containing protein 58 (.1) Lus10020165 [exp] 256 / 1e-82 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026966 [exp] 253 / 2e-81 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10005537 [exp] 251 / 2e-81 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10021659 [exp] 245 / 4e-79 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10001648 [exp] 245 / 5e-79 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10026879 [exp] 237 / 1e-75 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046800 [exp] 335 / 2e-114 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.012G056300 [exp] 330 / 5e-113 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.006G277000 [exp] 270 / 9e-89 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.018G003800 [exp] 268 / 4e-88 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.011G115400 [exp] 249 / 2e-80 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G396300 [exp] 243 / 2e-78 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.012G001400 [exp] 243 / 8e-78 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.002G005800 [exp] 240 / 2e-76 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.015G020000 [exp] 238 / 5e-76 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.019G031600 [exp] 237 / 3e-75 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10009669 pacid=23140031 polypeptide=Lus10009669 locus=Lus10009669.g ID=Lus10009669.BGIv1.0 annot-version=v1.0 ATGGAGGAGAATCTTCCTCCAGGGTTCAGATTCCATCCGACCGACGACGAGCTCATCTCCTTCTACCTCACTCGCAAGGTCTCTGACACGAGGTTCGATT GCAAGGCCATCGTCGACGCTGATCTCAACAAGAACGAGCCTTGGGATCTCCCCGGGAAAGCATCCATGGGGGAGAAGGAATGGTACTTCTTCAGCTTAAG AGACCGGAAATACCCGACCGGTCTTCGAACCAACCGGGCAACCGAAGCCGGGTATTGGAAGACTACGGGGAAGGACAAGGAGATCTTTTCTGCCACGGCC GGAACTCTTGTTGGGATGAAGAAAACCTTGGTTTTTTACAGGGGTAGAGCTCCGAGAGGCGAGAAGAGCAACTGGGTCATGCATGAGTATCGTCTCGAAA ATAAGCATCGGTACAAATCCATCAAGGAGGAATGGGTGGTGTGTAGGGTATTCCAGAAGAGCGTCTCGGCGCTTAAAAAACCACAACAAGAGTCGTCGTC GCAAGGGTCACCATGCGACACGAATTTTGTCACGAATAACAACGAGTTCGGAGATATGGAGTTCCCAAATCACATCAAGGCTACTCACACATTCTCTAGT GGATTATTGTTCAATGACATCTCAACATACAACAATAACATCATGATTGATCATGATATACCCAACAACAACAACCTTAATAACAACAACAACATTGTAC ATATGAACATGAACCAAGGCCAACCTAGTTTGCTCCCCTGGCCTACCTCTAACTTGCTCACCTCCAACCTCACTATGAATTCCTTGCTCCTCAAGGCATT GCAGCTCAGGAGTTACCAACAACATCAAGAAGCGTCCTCCTCGGTCGAGACCAATGTTGATTACTCCATGTTGAGTAACCAACAACAACAACAACAATTG CTGCAACAAGACCAATTGGGTTCGAGTTTCCAAGGATCTTCGGCCTCTTCGACTTCTAGAGCTCCGGAGATGGCGGTTCAACATGCACCATCGGAGTCGG GGCACTTGTTCAACACGGACTCCATTTGGTGA
AA sequence Show only first row Show all	>Lus10009669 pacid=23140031 polypeptide=Lus10009669 locus=Lus10009669.g ID=Lus10009669.BGIv1.0 annot-version=v1.0 MEENLPPGFRFHPTDDELISFYLTRKVSDTRFDCKAIVDADLNKNEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFSATA GTLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHRYKSIKEEWVVCRVFQKSVSALKKPQQESSSQGSPCDTNFVTNNNEFGDMEFPNHIKATHTFSS GLLFNDISTYNNNIMIDHDIPNNNNLNNNNNIVHMNMNQGQPSLLPWPTSNLLTSNLTMNSLLLKALQLRSYQQHQEASSSVETNVDYSMLSNQQQQQQL LQQDQLGSSFQGSSASSTSRAPEMAVQHAPSESGHLFNTDSIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009669 [exp]	0	1
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	2.4	0.8965
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	4.0	0.8643
AT5G14230			unknown protein		Lus10036989 [exp]	4.5	0.8727
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	5.6	0.8987
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	11.5	0.7724
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	12.1	0.8812
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	16.1	0.8691
AT5G14230			unknown protein		Lus10036990 [exp]	18.0	0.8638
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	21.0	0.8704
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	23.8	0.8658

Compare expression of checked genes

Lus10009669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.