Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73840 84 / 7e-18 ESP1 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) AT1G71800 45 / 5e-05 CSTF64 cleavage stimulating factor 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009030 [exp] 427 / 2e-149 AT1G73840 197 / 2e-59 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10014474 [exp] 64 / 1e-12 ND 43 / 4e-06 Lus10017923 [exp] 55 / 6e-08 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 54 / 9e-08 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 52 / 4e-07 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10006055 [exp] 50 / 2e-06 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056200 [exp] 191 / 3e-57 AT1G73840 224 / 2e-69 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) Potri.002G061200 [exp] 48 / 8e-06 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009670 pacid=23140056 polypeptide=Lus10009670 locus=Lus10009670.g ID=Lus10009670.BGIv1.0 annot-version=v1.0 ATGGCGGGAAAGCCGAACCCCGCCGACGTCCTGGCGGCGGACTTCGCCGGGATGACGAAGAGCCAGCTCTACGATATCATGTCTCAAATGAAGGCAAGTC TTCCATTCTCCTTCTCTTCTCTTCTCTTCTCTGCTCTTCTCTCATCTTCCTCCCCAACCTTGATTGAGCAGAACAGGCAGCAAGCGAGGGAGATACTCAT CCAGAACCCTCCATTAACAAAGGCCCTTTTCCAGGCTCAGATCATGTTGGGAATGGTGCAACCTCCTCCAGTGATTCCTGCAATCCAACCTACGGTATCG CAGCAGCCTCCACAATCAGCCCTGGCCTCACAGGCTCCAAACATTCCAAAGCCGCACCCAGTTCCATCTCAGGGACTTCATCAAAACAGGAAACATCACC AGAATCAACCTGCTGGGCCTATATCTGCCTCTGTTCCTCCTGTAAATCTTCCATCTCAATCTGCACCGATGCCAAAGGGACATGTTAATGCTCAGGTGAC AGGAATGCAAACTTCTCACGTTCCTAGTAATATGCTTCCCCAGCCTCATCAATCCCAATTGGCTGCTGGTCAGTTGCAACCGCCGCCAAGTGGAATCTCT CATTTGCTGCCCCAACCACCAATGTCGGCACAACCTAGACCACCACATTCTATGCCTGGCTTCCATAATCAGTATCAGCAAATGGGATCAAATTCGGGCT TCCAACATGGTGGCGGTCATCAACATCCTTCACAGTCCATGTTTCATTCAGGCAATAGAACTCAACATCCGGGGCCTTCATATCCTCAAGGACAACAACC GGTTCCAAGCCAGCCCCCACCGCAATCCCTTTATCAGGGCGGAGGTTCTCATTTGACATCGGATTTCAATCAGGGTAGCAGCTCAATGCAAGTTGATCGC GGATCATCATCCAGTTGGCCACCTGGCCCTCCGGATAGCTCGACAATGGGTCAAGCTCCTTCAAATCAACCAGCGCGCTCTGCGGCGTTAAGCCCGGATA TGGAGAAGGCACTACTCCAGCAGGTAATGAGCCTGACTCCAGAGCAGATCAATCTCCTGCCCCAAGAGCAGAGGAATCAAGTGCTTCAGCTGCAACAGAT GCTTCGCCAATGA
AA sequence Show only first row Show all	>Lus10009670 pacid=23140056 polypeptide=Lus10009670 locus=Lus10009670.g ID=Lus10009670.BGIv1.0 annot-version=v1.0 MAGKPNPADVLAADFAGMTKSQLYDIMSQMKASLPFSFSSLLFSALLSSSSPTLIEQNRQQAREILIQNPPLTKALFQAQIMLGMVQPPPVIPAIQPTVS QQPPQSALASQAPNIPKPHPVPSQGLHQNRKHHQNQPAGPISASVPPVNLPSQSAPMPKGHVNAQVTGMQTSHVPSNMLPQPHQSQLAAGQLQPPPSGIS HLLPQPPMSAQPRPPHSMPGFHNQYQQMGSNSGFQHGGGHQHPSQSMFHSGNRTQHPGPSYPQGQQPVPSQPPPQSLYQGGGSHLTSDFNQGSSSMQVDR GSSSSWPPGPPDSSTMGQAPSNQPARSAALSPDMEKALLQQVMSLTPEQINLLPQEQRNQVLQLQQMLRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	0	1
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	1.0	0.9622
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	1.4	0.9404
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	4.1	0.9115
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	4.5	0.9220
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	5.9	0.9003
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	6.0	0.9003
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	6.5	0.9362
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	8.5	0.9199
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	9.5	0.9188
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	9.9	0.9164

Compare expression of checked genes

Lus10009670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.