Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18390 866 / 0 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 489 / 1e-159 ATCFM3B CRM family member 3B (.1) AT4G29750 473 / 2e-154 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 460 / 1e-147 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G23070 454 / 1e-146 ATCFM3A CRM family member 3A (.1) AT5G16180 400 / 8e-128 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G25440 108 / 6e-25 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G13070 96 / 4e-21 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT2G28480 96 / 6e-21 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 87 / 1e-17 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009031 [exp] 1524 / 0 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 471 / 2e-151 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 474 / 3e-149 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 446 / 5e-144 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 446 / 2e-142 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10033576 [exp] 411 / 2e-132 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10039451 [exp] 225 / 2e-65 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10017618 [exp] 166 / 2e-44 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10020391 [exp] 111 / 1e-25 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056100 [exp] 987 / 0 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 511 / 2e-168 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 488 / 8e-158 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.017G116700 [exp] 425 / 2e-136 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G148901 [exp] 238 / 5e-72 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G176900 [exp] 111 / 2e-25 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 103 / 1e-23 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 97 / 6e-21 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 88 / 9e-18 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 54 / 5e-07 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10009671 pacid=23140061 polypeptide=Lus10009671 locus=Lus10009671.g ID=Lus10009671.BGIv1.0 annot-version=v1.0 ATGAACTTGGCAACTGCGAAGCTATCAGAACTCTCACTCTTCTCCTTCAGAAAACCATTCAGCTGCTCCTCCTCATTAAGAACCAACAGATTCTCCAAAA CCCAGAACCCTAAATCCAGAACTTCCAATTCGCCCAATTGGGTCTCCAAGTGGCCGCAGAGAAAGAACAATACAGCTCGGGATTTCCCCAGAAGAAGAGA GGTCATCAAGCCGCCGCCGCCGTCGGCGGATGACGAGAAAGCTAAGTACTTAGCTCGGGGCAGAGGGCATAATGCAGTGGAGAGAATCGTGCTCCGGTTG AGAAACTTGGGTTTGGCAACGGACGACGATGAAGAACAACAACAAGTGGAAAAGGAAGAAAATTTGGTTGAGGAGAATTTAACGGCGGTTAACGGAGATG AGAGGCTGTCGGACTTGCTGAAGAGGGAGTGGATACGGCCGGATACGATTCTGGAGGATGGATTTGACGGCGAGGAGATGGCGTTACCGTGGGAGAGAGA GGAGAAATTGTTGGTGGAGGGAGATGATGGAGGGAAAGAGGAGAGGAAAATGAGGAGGGTCAAGGCTCCGACTTTGGCGGAGTTGACTATTGAGGATGAG GAGCTGAGGAGGCTGAGGAAGAATGGGATGACGTTGAGGGAGAGGATCAATGTTCCGAAAGCCGGAATTACTGAGGAAGTCTTGGAGAAGATTCATGATA AGTGGAGGAAAGATGAGCTTGTTAGGCTCAAGTTTCATGAGTTTCTGGCTCATGATATGAAGACTGGCCATGAGATTGTTGAGCTAACCGGTTATATTAA TCATCAGCGTCGTACAGGAGGGCTAGTTCTATGGAGAGCAGGAAGTGTTATGATAGTTTACAGAGGAAGTAACTATGAAGGACCCAAATCTAGTTCACAA TCTGCTACTACAGAAGCTGATTCTATGTTGATCCCAGATGTATCTTCATCGAAAAAAGATGAGGGAGCAACGTCGGATCCAGATTCAGTACCGGTTGCGA GGCTTCCAGAACAAGCTGAGAACTTGACAGAAGAGGAAATTGAGTATAACAGCCTCTTGGACGGATTAGGTCCCCGTTACGAGGCATGGTGGGGTACGGG AGTCCTCCCCGTGGATGCTGATTTTCTCCCTCAGAAAGTTGAAGGTTACATGACACCGTTCAGGCTTCTCCCTACCGGAATGAGGCCACGACTTACGAAT ACCGAGATGACTAACATGCGGAAACATGCCAAGTCGCTTCCCTGCCATTTTGCCCTCGGGAGAAACAGACATCATCAAGGGCTTGCTGTTGCAATACTCA AGCTCTGGGAGAAAAGCCTGCTTGTGAAAATTGCAGTGAAACGAGGCATACAGAACACGAACAACAAATTGATGGCTGATGAGATCAAGCAATTAACAGG AGGTGTCCTTCTGCTGAGAAACAAGTATTACATAGTCTTATATCGTGGAAAGGATTTCTTGCCGGAAAGTGTAGCTGCAGAGTTAGCTGAGAGGCAAGAG ATGACTAAACAGATTCAGGACACAGAGGAGAAGCTACGAATCAAGCTCGAGGCGGCATCACTTGAAGAAGAAGATGATAATAACCACCTCATCGTAGCAT CCGAGAGGCACGAAATAGCCAAACCGATTCAAGAGAAAGAAACAAGCCGAGAGGCATCGCCATCAGGCGAAGGAAGTGCCCTCGCAGGGACGTTAGCGGA GTTTTATGAGGCTCAAGCACGATGGGGAAGAGATACGTCTGCTGAAGAACGCGAAAAGATGGTCGAGGAAGCTTCCAGGGCTAGAACTGCTAAGCTCGTC AGGCGAATCGAGCATAAGCTATATGCTGCTCAAGCGAAGAAGCTTAGAGCGGAGAAACTGCTGTCAAAGATTGAAGCCTCGATGGTACCTGCTGATCCGG ATTACGACAAAGAAACCATTACTGACGAGGAGCGGATCATGTTCCGGAAAATCGGGTTAAGAATGAAGCCGTACTTACCTATGGGAATCCGAGGCGTTTT CGATGGGGTTATAGAGAACATGCATTTGCATTGGAAGTACAGGGAGCTTGTGAAGCTGATAACCAAGCAAAAGACGATGACATTCGTTGAAGATACGGCT AGACTGCTGGAATACGAGAGTGGCGGGATACTAGTCGCTATAGAGAGGGTATCGAAAGGTTATGCACTGATTTACTACCGCGGGAAGAACTACCGTCGCC CTATTAGCCTTCGACCGAGGAATCTTCTAACAAAGGCGAAAGCTTTGAAGCGTTTTGTAGCGATGCAACGCCACGAGGCTCTAAGTCAGCACATATCTGA ACTGGAGCAGAATATACAACGGCTCAATGCAGAAATCGGTATATCTGATGACGAAAGTTTCATCAGCCAGGACGCAGAGGCGCCCAAGCAGTTCGATCGC CACTCCGACTTCACTGATGATGAGGATGAAACTTTGTATTCATCGTCTGATGAGGATGATAGCGATGACGACAGAGAGGAGGAACTTGATTGGAACGATG AGGATTTCCAGTTTTCTGACTCGGAGAATAACTGA
AA sequence Show only first row Show all	>Lus10009671 pacid=23140061 polypeptide=Lus10009671 locus=Lus10009671.g ID=Lus10009671.BGIv1.0 annot-version=v1.0 MNLATAKLSELSLFSFRKPFSCSSSLRTNRFSKTQNPKSRTSNSPNWVSKWPQRKNNTARDFPRRREVIKPPPPSADDEKAKYLARGRGHNAVERIVLRL RNLGLATDDDEEQQQVEKEENLVEENLTAVNGDERLSDLLKREWIRPDTILEDGFDGEEMALPWEREEKLLVEGDDGGKEERKMRRVKAPTLAELTIEDE ELRRLRKNGMTLRERINVPKAGITEEVLEKIHDKWRKDELVRLKFHEFLAHDMKTGHEIVELTGYINHQRRTGGLVLWRAGSVMIVYRGSNYEGPKSSSQ SATTEADSMLIPDVSSSKKDEGATSDPDSVPVARLPEQAENLTEEEIEYNSLLDGLGPRYEAWWGTGVLPVDADFLPQKVEGYMTPFRLLPTGMRPRLTN TEMTNMRKHAKSLPCHFALGRNRHHQGLAVAILKLWEKSLLVKIAVKRGIQNTNNKLMADEIKQLTGGVLLLRNKYYIVLYRGKDFLPESVAAELAERQE MTKQIQDTEEKLRIKLEAASLEEEDDNNHLIVASERHEIAKPIQEKETSREASPSGEGSALAGTLAEFYEAQARWGRDTSAEEREKMVEEASRARTAKLV RRIEHKLYAAQAKKLRAEKLLSKIEASMVPADPDYDKETITDEERIMFRKIGLRMKPYLPMGIRGVFDGVIENMHLHWKYRELVKLITKQKTMTFVEDTA RLLEYESGGILVAIERVSKGYALIYYRGKNYRRPISLRPRNLLTKAKALKRFVAMQRHEALSQHISELEQNIQRLNAEIGISDDESFISQDAEAPKQFDR HSDFTDDEDETLYSSSDEDDSDDDREEELDWNDEDFQFSDSENN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	1.7	0.9643
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	2.0	0.9630
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	2.2	0.9524
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	4.5	0.9609
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	5.2	0.9629
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	5.5	0.9388
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	5.5	0.9500
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10022454 [exp]	5.7	0.9368
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	6.3	0.9416
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	6.9	0.9451

Compare expression of checked genes

Lus10009671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.