Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18370 801 / 0 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT3G14590 82 / 7e-16 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G53590 74 / 2e-13 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G03370 61 / 3e-09 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G48060 60 / 5e-09 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G05500 59 / 7e-09 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G06850 59 / 1e-08 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 58 / 2e-08 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 57 / 4e-08 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G11100 57 / 5e-08 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009032 [exp] 1456 / 0 AT3G18370 907 / 0.0 C2 domain-containing protein (.1) Lus10013710 [exp] 77 / 3e-14 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005578 [exp] 75 / 1e-13 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026192 [exp] 75 / 2e-13 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042475 [exp] 74 / 3e-13 AT3G14590 741 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10018839 [exp] 62 / 2e-09 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10015709 [exp] 61 / 2e-09 AT5G48060 371 / 2e-120 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 60 / 8e-09 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 59 / 1e-08 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046700 [exp] 1048 / 0 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.012G056000 [exp] 1041 / 0 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.001G379800 [exp] 75 / 2e-13 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G271400 [exp] 64 / 5e-10 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 63 / 6e-10 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 63 / 7e-10 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 63 / 9e-10 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.019G080000 [exp] 61 / 5e-09 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.018G025000 [exp] 59 / 1e-08 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G058900 [exp] 58 / 2e-08 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10009672 pacid=23140077 polypeptide=Lus10009672 locus=Lus10009672.g ID=Lus10009672.BGIv1.0 annot-version=v1.0 ATGAGGAAAGTAGGTGGGATGAGAGTGGATGAGATTGTGGAAGCTTTCAATGCTCTTTATGAGGAGAAGAAGCCATTTCTGCCCTTTGTGATCCCTTTGG TGCTCTTGGTTTGGGGCATTGAGAGATGGGTTTTCTCCCTTTCCAATTGGGTTCCTCTTGCTGTTGCTGTTTGGGCTCTTCTTCAGTATACGAGTCATCA GAAGAGAATACTTGTGGAAGATCTGAACAATAAATGGAAACGGGTTATATTGAGCACCTCGCCAACAACAGCTGTAGAGCACTGTGAGTGGCTGAACAAG ATGTTCATTGAGTTCTGGCCTAACTACTTCAACCCAAGGCTTTCGACAAGGTTCTCGCACATGGTCGAGAAACTCTTGAAGGAGCGCAAACCAAAGCTCA TCGAATGGGTTGAACTACAAGAGTTTTCGTTAGGCTCGTCCCCACCTAGCTTGGGACTGAATGGTACTAGGTGGGCAACTTCAGGAGATCAGCGAGTCAT GCACATGGGTTTTGATTGGGATACATGTGACATGAGCATCATGCTGCTTGCCAAGCTGGCTAAGCCATTAGGAACCGCTCGGATCGTAGTTAACAGCCTG CAGATCAAGGGGGATCTTCTGTTGATGCCAATATTGGACGGGAGAGCAATTCTGTACTCGTTCGTCTCAACCCCCGACGTGAGGATCGGAGTTGCCTTTG GAAGTGGTGGAAGCCAGATTCCCGCCACAGAACTCCCGGGTGTCTCTTCTTGGTTGGTCAAGCTTTGCTCTGACACCTTAGATAAAACGATGGTTGAACC TCGACGACGTTGTTTTTCCTTACCAGCTGTAGACTTGAGAAAGAAGGCTATTGGAGGGATCATACATGTTACCGTTGTTTCAGCTAGTAAAATGTCTCGG GGTAGCTTTAGGGGGAGTCCATCAAGAAAGCAGTTATGTTCAGATGATCATTTCGGTGAGAAAGATCTGCAGACGTTCGTGGAAGTCGAACTCGGTCAGT TAACGAGGAGAACGAGTGTAAGACCGGGATCAAGTCCTAAATGGAACTCAACTTTCAATATGGTGTTGCATGAAGAAACTGGAATCTTGAAGTTCAACCT CTGCAACTGTAACCCTGGAAGTGTCAAGTATGACTACCTGGGAAGTTGCGAGATCAAGATGAAGTACGTGGCAGATGATTCAACCATTTTCTGGGCGATC GGTCCAGATTATAGTATAATAGCTAAACAAGCTGAGTTCAGTGGACGAGAAGTTAAGATGATAGTTCCCTTTGAAGGGCCGAGCACCGGGGAGTTGGCTG TCAAGCTTGTGATGAAAGAGTGGCAATTCTCGGACGGGACTCATAGCTTGAACAAGTACAAGAGCAGCTCTAGGCAATCTGTGGATGGATCTTCGATCAT TCCGTCGAGAACAGGAAGGAAGATCAATCTAACTGTCGTGGAAGGGAAAGATTTCACCGCAAAAGAACGATCTGGCAAGTGTAACGCCTACGTTAAGTTA CAGCTGTCCAGAGGACTAAGACTTCACCGTCTCCGAATCCTACGTGGAATCAGAAGTTCGAGTTCGATGAGATTGGTGGCGACGAATACATTAAGCTTAA ATGCTACTCTGAAGAGTAACGGATCCTCTGAAGAGGTCTTGGGAGATGAAGGCCTCGGCAGTGCGAGGGTGAATTTGGAAGGGTTATTGGAGGGTTCGGT AAAGGATGCTTGGATTCCTCTCGAGAAAGTGAATTCTGGAGAGCTCCGGCTTCTAATCGAAGCAGTCAAAGTTGAAGACGAAGGATCCAAGAGTTCGATG TCATTTGGTGGCTGGATTGAACTTGTAATCATCGAAGCAAGGGATCTTATTGCCGCTGATCTCAGGGGGACAAGTGATCCATATGTCCGGGTGCAATATG GGAACTTGAAGAAGAGAACAAAGGTGCTCTTTAAAACCCTAACCCCTCAATGGAATCAAACCCTTGAGTTCCCCGACGATGGAAGCCCTCTCGAGTTGCA TGTCAAAGACCATAATGCTTTGCTACCTGGTTCCAACATAGGTGACTGTGTTGTGGAGTACCAAAGGCTGCCTCCAAACCAAACGGCCGACAAGTGGATA CCTCTACAAGGCGTTAAAAGAGGTGAGATACACATTCGAGTCACTAGGCGAGTCCCTGAACAACCAAAGAGATCCACCTCAGAGTCTGAACCCTCTTTGA GCAAATCACACCAGATTGCTGGCCAGTTGAAACGTATGATGGTAAAGTTTCGATCTTCGATGGAAGGAGGGAACCTCGACGAACTATCTATAGCTATGAG CGAGATGGAGAGTGTAGCAGACGGTCAAGAAGAGTACATGGTGCAGCTCGAGACCGAACAGATGCTTCTGCTGAATAAGATCAAGGAGCTCGGTGAAGAA ATGAACAGCTCTTCCCCAGTCTTGGAAAGAAGATCATCCGCTGCGGTTTAA
AA sequence Show only first row Show all	>Lus10009672 pacid=23140077 polypeptide=Lus10009672 locus=Lus10009672.g ID=Lus10009672.BGIv1.0 annot-version=v1.0 MRKVGGMRVDEIVEAFNALYEEKKPFLPFVIPLVLLVWGIERWVFSLSNWVPLAVAVWALLQYTSHQKRILVEDLNNKWKRVILSTSPTTAVEHCEWLNK MFIEFWPNYFNPRLSTRFSHMVEKLLKERKPKLIEWVELQEFSLGSSPPSLGLNGTRWATSGDQRVMHMGFDWDTCDMSIMLLAKLAKPLGTARIVVNSL QIKGDLLLMPILDGRAILYSFVSTPDVRIGVAFGSGGSQIPATELPGVSSWLVKLCSDTLDKTMVEPRRRCFSLPAVDLRKKAIGGIIHVTVVSASKMSR GSFRGSPSRKQLCSDDHFGEKDLQTFVEVELGQLTRRTSVRPGSSPKWNSTFNMVLHEETGILKFNLCNCNPGSVKYDYLGSCEIKMKYVADDSTIFWAI GPDYSIIAKQAEFSGREVKMIVPFEGPSTGELAVKLVMKEWQFSDGTHSLNKYKSSSRQSVDGSSIIPSRTGRKINLTVVEGKDFTAKERSGKCNAYVKL QLSRGLRLHRLRILRGIRSSSSMRLVATNTLSLNATLKSNGSSEEVLGDEGLGSARVNLEGLLEGSVKDAWIPLEKVNSGELRLLIEAVKVEDEGSKSSM SFGGWIELVIIEARDLIAADLRGTSDPYVRVQYGNLKKRTKVLFKTLTPQWNQTLEFPDDGSPLELHVKDHNALLPGSNIGDCVVEYQRLPPNQTADKWI PLQGVKRGEIHIRVTRRVPEQPKRSTSESEPSLSKSHQIAGQLKRMMVKFRSSMEGGNLDELSIAMSEMESVADGQEEYMVQLETEQMLLLNKIKELGEE MNSSSPVLERRSSAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009672 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	4.7	0.7829
AT3G23880			F-box and associated interacti...		Lus10023263 [exp]	7.7	0.6656
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	15.5	0.7252
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	21.8	0.7212
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	22.5	0.7331
AT2G34930			disease resistance family prot...		Lus10016342 [exp]	26.5	0.7015
AT1G80450			VQ motif-containing protein (....		Lus10020092 [exp]	36.2	0.6369
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	40.9	0.7073
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	44.7	0.6533
AT5G06440			unknown protein		Lus10016186 [exp]	44.7	0.7197

Compare expression of checked genes

Lus10009672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.