Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23280 349 / 3e-116 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 291 / 1e-94 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT4G35450 74 / 3e-14 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 73 / 9e-14 AKR2B ankyrin repeat-containing 2B (.1) AT1G63900 57 / 1e-08 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT2G38195 56 / 2e-08 RING/U-box superfamily protein (.1.2) AT1G59560 56 / 3e-08 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT2G38185 55 / 5e-08 RING/U-box superfamily protein (.1.2.3.4) AT2G38220 55 / 7e-08 RING/U-box superfamily protein (.1) AT5G19080 53 / 2e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009035 [exp] 769 / 0 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033896 [exp] 238 / 3e-73 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033895 [exp] 120 / 1e-28 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003551 [exp] 106 / 3e-26 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10013859 [exp] 66 / 3e-11 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10020272 [exp] 66 / 5e-11 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10001605 [exp] 65 / 1e-10 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10009696 [exp] 60 / 2e-10 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10036033 [exp] 59 / 4e-10 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070750 [exp] 520 / 0 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G167600 [exp] 513 / 1e-179 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 491 / 2e-171 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G225300 [exp] 307 / 3e-99 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 109 / 5e-27 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.004G210100 [exp] 63 / 1e-10 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 63 / 1e-10 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.009G070700 [exp] 60 / 1e-10 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.006G100400 [exp] 59 / 4e-09 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.010G185200 [exp] 56 / 5e-08 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10009674 pacid=23140043 polypeptide=Lus10009674 locus=Lus10009674.g ID=Lus10009674.BGIv1.0 annot-version=v1.0 ATGGGGCAGTTCCAATCCAAGCCATCCAAGGATGAATTGGTATACCAGCAAGTCAGCTATGGGAACGCCGATGGAATCAGAAGCCTTGTCAGGGAAGGGG CTGGCCTCGAGTGGATAGACAGCGAAGGGAAAACGCCATTGATTTTGGCGTGCATGAACCTTGAGCATTACAACGTTGCCAAAACCCTTATCGGCCTTGG TGCTAATATTAATGCCTATCGTCCCGGTCGTATGGGCGGGACTCCATTGCATCATGCAGCTAAATTAGGACTCGAGCAGAATGTTAAACTACTTCTTTCA CACGGAGCTAATGCATTGGTGATGAATGATGACTGTCAAACGCCTCTTGAAGTTGCTAGAGCAAAAGGATACACCAATGTGGTTCGCGCCATTGAGGGTC ACCTATGCCTATTCTCTGGTTTGCTCCGTGAGTTTTATGGCCCAGGATTTCTGGAAATTCTGACTCAGTTTGTCACGAGGAAAATATGGGTTGTTGTTTT ACCAACTGGTTCACGCAATGCCAGGGAGCCGTTTAAGTTAGAGCTAGCAATATATCCTAGTTCACAGGTTGCCAAACCACGTACGGTGATTTCTTTGTGG AAGGCTAACCTAGAGGACCCTAAGTTGCAGCAGGCCGATCCTTCAGTAACAATAGTTGACAATTCCAACATGCCAAGGGGCCGCAGGCGGAGACGAATGA GGCATAGACCTTCAACTAGGCAAACACGGATAAGACTTGCTGCTGCAAAGGAAGGCGATAGGCAACAGCTTCAGTGGTTTTGTGATGCCTGCACCCCCCT CAAAAGCGCTTTCTGTCTGGTCCTCTTCGCAACACAGCCTCCACAATTTCTGCGAAGTTCGCACCCTCCTTCTCAGCCTCAGGCAACAGCACCCTTACCT GTTGATGATCGAGAATTAGCAATGGCAATGAGTGCCTCTTTCCAATCAGACATAAATGTGACTCCTACTTTGGATGTCAATGCTAGCTCTGAGGCAAGTG CCTCTACCAGTTCGAATGACTTTGTGAAGGCTAGCACCCATGGTCCTATGGCATCAGCAGCTCAACCTGCGTCTGGAGCAAGTTCTAGTAAGAGCCAGGG GAATATCCACTATTCTAACTTGCCTGATGTATCCACAGCACCTCAAGCATCTAGCTCAGCCCCATCAGCTCCACCATTTGTTGATGACATTGTGGAAGAT GCCCCGATTCAGTACCCAAGCATTGAGTTTGACCCTGTTGATTTGCCTTCCACACCCATGGAGGAATCACCCGTCAAACCGGGTGAAAAGAAGGAAGATG GTGCTTCCTCTGTGTGTGTGATATGTTTGGATACTCCCGTGGAGGGAGCTTGCGTGCCGTGCGGTCACATGGCCGGATGTATGTCTTGTTTGACAGAGAT CAAGACCAAGAATTGGGGTTGCCCTGTGTGCCGCACCAAGATTGATCAGATCGTAAGGCTGTATGCGGTTTGA
AA sequence Show only first row Show all	>Lus10009674 pacid=23140043 polypeptide=Lus10009674 locus=Lus10009674.g ID=Lus10009674.BGIv1.0 annot-version=v1.0 MGQFQSKPSKDELVYQQVSYGNADGIRSLVREGAGLEWIDSEGKTPLILACMNLEHYNVAKTLIGLGANINAYRPGRMGGTPLHHAAKLGLEQNVKLLLS HGANALVMNDDCQTPLEVARAKGYTNVVRAIEGHLCLFSGLLREFYGPGFLEILTQFVTRKIWVVVLPTGSRNAREPFKLELAIYPSSQVAKPRTVISLW KANLEDPKLQQADPSVTIVDNSNMPRGRRRRRMRHRPSTRQTRIRLAAAKEGDRQQLQWFCDACTPLKSAFCLVLFATQPPQFLRSSHPPSQPQATAPLP VDDRELAMAMSASFQSDINVTPTLDVNASSEASASTSSNDFVKASTHGPMASAAQPASGASSSKSQGNIHYSNLPDVSTAPQASSSAPSAPPFVDDIVED APIQYPSIEFDPVDLPSTPMEESPVKPGEKKEDGASSVCVICLDTPVEGACVPCGHMAGCMSCLTEIKTKNWGCPVCRTKIDQIVRLYAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	0	1
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	3.5	0.8309
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	4.9	0.8123
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	5.2	0.8293
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	6.2	0.8406
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	6.6	0.8052
AT3G09830			Protein kinase superfamily pro...		Lus10026523 [exp]	7.2	0.7776
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	8.4	0.7946
AT2G46620			P-loop containing nucleoside t...		Lus10035073 [exp]	10.6	0.7906
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	12.2	0.7788
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	14.7	0.8236

Compare expression of checked genes

Lus10009674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.