Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38100 85 / 1e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G68040 86 / 2e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66700 84 / 5e-19 PXMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.3) AT5G38780 84 / 1e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G15125 79 / 7e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G37970 79 / 1e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44840 78 / 1e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66720 78 / 1e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G37990 77 / 2e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26420 76 / 4e-16 GAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021802 [exp] 84 / 1e-18 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 72 / 3e-14 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032569 [exp] 71 / 3e-14 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2) Lus10043177 [exp] 69 / 2e-13 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10036550 [exp] 66 / 3e-12 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 66 / 4e-12 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 65 / 7e-12 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10024671 [exp] 62 / 7e-11 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 61 / 2e-10 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049900 [exp] 126 / 3e-34 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G123000 [exp] 108 / 3e-28 AT5G37990 249 / 9e-81 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122900 [exp] 108 / 2e-27 AT1G15125 295 / 5e-98 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122700 [exp] 107 / 4e-27 AT5G38780 322 / 2e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136200 [exp] 102 / 3e-25 AT1G68040 312 / 1e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G121800 [exp] 100 / 9e-25 AT5G37990 327 / 8e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136300 [exp] 100 / 2e-24 AT1G68040 379 / 7e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122000 [exp] 99 / 4e-24 AT5G37970 327 / 7e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122950 [exp] 98 / 9e-24 AT1G15125 321 / 4e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 94 / 3e-22 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009675 pacid=23140040 polypeptide=Lus10009675 locus=Lus10009675.g ID=Lus10009675.BGIv1.0 annot-version=v1.0 ATGAACCGTGAAAAAGGTTTCTTTCATAAGGTTAAATCTGATCTCCGCCTCGAACTTGCAGCGAACCTGAAATATGTGCTATTTTCAGATCGTGATATCC CAAATAACTCACTTTCGAATGATTTTAACTACCTCATCAAAATAATTCGTTTGGCTTGGTTTCCGTGGAGAACAAGGATCTGTGAGGTTCGCGCCAAGTG TACCGTGCTGGTTCACCAAATCACAGATATAAACCTCAGCCTCCATAAACAGCGCCAAACGAGAAGAAAAATCTTCGCCGAGGAGAATCTAGAGACCGCC ATATTCTCCACGCAATCTTCTTCTTCACAATGGGATTCCTACTATCTCGCGGGTGTCCCTGGTTCGTTCCACGATCGACTCTTCCCCTCTTCGTTCCTCC ACTTGGTCCACACTTCCTATGCCTTGCAGTGGCTCTCCAAAGTTCCCGGCCCAGTTCTCGAAATTGATTCGCATGTATGGAACATGGAGAACGTATTTAG GAGGTGGGGGGACCAGATCAAGATCGCTTATTGGGATCAATTTTTGAATGCTAGAGAACGGGAAGTTGTTCCCGGTCGGATAGTGTTGGTTGTGATACCG GGTCTGTCTGATGGAATGGCTCATTCTCGGGTTACTTCTAATGTCACATACAGTGTGTTGGGTGATTGCCTCAAGGACATGGAGTCGAAAGTCAGTTTAA TTCACCCGTTGGGGTCGAACCGGGTCGATCCATAA
AA sequence Show only first row Show all	>Lus10009675 pacid=23140040 polypeptide=Lus10009675 locus=Lus10009675.g ID=Lus10009675.BGIv1.0 annot-version=v1.0 MNREKGFFHKVKSDLRLELAANLKYVLFSDRDIPNNSLSNDFNYLIKIIRLAWFPWRTRICEVRAKCTVLVHQITDINLSLHKQRQTRRKIFAEENLETA IFSTQSSSSQWDSYYLAGVPGSFHDRLFPSSFLHLVHTSYALQWLSKVPGPVLEIDSHVWNMENVFRRWGDQIKIAYWDQFLNAREREVVPGRIVLVVIP GLSDGMAHSRVTSNVTYSVLGDCLKDMESKVSLIHPLGSNRVDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10009675 [exp]	0	1
AT3G18570			Oleosin family protein (.1)		Lus10042957 [exp]	2.4	0.7530
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	32.4	0.7027
					Lus10032730 [exp]	33.4	0.6791
AT5G59830			unknown protein		Lus10005889 [exp]	38.7	0.6839
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	51.6	0.7335
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10002810 [exp]	69.3	0.6733
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10023901 [exp]	101.6	0.7018
AT1G76350		NLP5	Plant regulator RWP-RK family ...		Lus10016018 [exp]	122.7	0.7060
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003452 [exp]	126.1	0.6743
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	140.6	0.6744

Compare expression of checked genes

Lus10009675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.