Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48635 403 / 2e-140 PEX3-2, PEX3 PEROXIN 3-2, peroxin 3 (.1.2) AT3G18160 379 / 9e-131 PEX3-1 peroxin 3-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009038 [exp] 687 / 0 AT1G18070 654 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10041998 [exp] 571 / 0 AT1G48635 436 / 2e-153 PEROXIN 3-2, peroxin 3 (.1.2) Lus10018002 [exp] 269 / 2e-89 AT1G48635 201 / 2e-63 PEROXIN 3-2, peroxin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049700 [exp] 442 / 2e-155 AT1G48635 441 / 5e-155 PEROXIN 3-2, peroxin 3 (.1.2) Potri.015G041700 [exp] 441 / 4e-155 AT1G48635 439 / 1e-154 PEROXIN 3-2, peroxin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04882 [flax] [poplar] Peroxin-3 Peroxin-3
Representative CDS sequence Show only first row Show all	>Lus10009676 pacid=23140087 polypeptide=Lus10009676 locus=Lus10009676.g ID=Lus10009676.BGIv1.0 annot-version=v1.0 ATGTTTTCTCTAAGTGACTTTTGGAGAAGGCATAAGAAGAAGGTTCTTGCTACAGCTGGTGTTGTAGGAAGTGGTTATTGCCTGTATAAAGTGTATAATG CGTACAAAAATCAGCTTGCTGATATGGAGAGACGGCTTGCTGATGAACGAGAGCATGATGAACTTGTTAAGGCACAGATGCAATCTCATTTCGAGATCAT ACAGAGAATAGCTGATACGGTAACATTGCCACATTCCATTAGTTATTTGAATAATCGGATAACAGAAGAATTGGACCATTCGTATATCACAGAGGCTTTA CAAAGAGGGAAGGGTCAGCCTGCCAGTCTGACTACGGCAGAGAAACTTGAGCTATGGGACAAGCTCAAAATCATAAGTTTCACAAGAATGACGGTGTCGC TGTGGGCAGTAACCCTGCTTAGCTTGTATGTTAGAGTTCAAGTGAATATTCTTGGAAGACATTTATATATCGACATAGCACATGGTCTGGGGATCTCTTT TATGCCAGAGGATGCTGATCTCATCTACCGAGATGACCAGCAGAAATTCTTGGCTAGTGCAGATTATCTCCCTCATTCTGGCTTGCTTCTGTTGGCAAAT GATATACAAGTTGCCGCAGCAGAAGTTCTAAAAGGGAAACAACTAAAGGATTTGTTTGACGTGGCAGCACTTCGCGAAACCGTCATGCACATATCCGACA CTTTCATAAGTATGGTAAGTTCCGGCAGGTGGGTAGATTACTTAATGCCGGATGATACCAAGCTACACAAAGGCGCAATTGTCCCCACTGGCAGCGACAC GTTCCACACCGATCTTTCAAAATTTGACCAGCTAATGCTCGAGACACGAGACGTAATACTGAGCCCTGAATTCGGCAAAGTGGTGGAGGCATCTCTGAAA CAACTGGGAACTGCATTGGTGGAAGACTTCGAATCCGTCGAGGGTGGTCTAACATCATCAGGGATACCCTTAGCGAAACTGTTGCCTCGAGTCGCCCAGA TGAGTTCGTCCTTGCTCAAGGAACCGAGCGAGAACCGTTACGTCCAAATCATGCAAGGCTCCCCGGAGGTTGAGCTCTTCTTCACTCTCTTGTACGCCAA CGCTCCCCCGCCGGAGTCCTAA
AA sequence Show only first row Show all	>Lus10009676 pacid=23140087 polypeptide=Lus10009676 locus=Lus10009676.g ID=Lus10009676.BGIv1.0 annot-version=v1.0 MFSLSDFWRRHKKKVLATAGVVGSGYCLYKVYNAYKNQLADMERRLADEREHDELVKAQMQSHFEIIQRIADTVTLPHSISYLNNRITEELDHSYITEAL QRGKGQPASLTTAEKLELWDKLKIISFTRMTVSLWAVTLLSLYVRVQVNILGRHLYIDIAHGLGISFMPEDADLIYRDDQQKFLASADYLPHSGLLLLAN DIQVAAAEVLKGKQLKDLFDVAALRETVMHISDTFISMVSSGRWVDYLMPDDTKLHKGAIVPTGSDTFHTDLSKFDQLMLETRDVILSPEFGKVVEASLK QLGTALVEDFESVEGGLTSSGIPLAKLLPRVAQMSSSLLKEPSENRYVQIMQGSPEVELFFTLLYANAPPPES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10009676 [exp]	0	1
					Lus10035120 [exp]	23.7	0.7346
					Lus10024103 [exp]	32.3	0.7187
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	33.5	0.7640
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	36.9	0.7086
AT1G70250			receptor serine/threonine kina...		Lus10032228 [exp]	38.5	0.7482
AT5G66580			unknown protein		Lus10000739 [exp]	38.5	0.7053
AT1G07850			Protein of unknown function (D...		Lus10036142 [exp]	67.0	0.6833
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	83.3	0.7075
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10019038 [exp]	84.6	0.6956
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10003990 [exp]	104.7	0.6731

Compare expression of checked genes

Lus10009676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.