Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73980 947 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT1G26190 915 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT2G01460 211 / 5e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40870 84 / 1e-16 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT1G55810 82 / 4e-16 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 82 / 4e-16 UKL4 uridine kinase-like 4 (.1.2) AT3G27440 81 / 9e-16 UKL5 uridine kinase-like 5 (.1) AT3G27190 78 / 5e-15 UKL2 uridine kinase-like 2 (.1) AT1G32060 62 / 5e-10 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009040 [exp] 1292 / 0 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 912 / 0 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 893 / 0 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10025598 [exp] 228 / 5e-64 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027063 [exp] 223 / 4e-62 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041569 [exp] 91 / 8e-19 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 87 / 9e-18 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 79 / 4e-15 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 78 / 9e-15 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055400 [exp] 1033 / 0 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 925 / 0 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 911 / 0 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G130200 [exp] 220 / 4e-61 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 218 / 3e-60 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G069600 [exp] 87 / 7e-18 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 87 / 1e-17 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 84 / 1e-16 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G467800 [exp] 81 / 1e-15 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 78 / 6e-15 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF01928 [flax] [poplar] CYTH CYTH domain CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10009678 pacid=23140039 polypeptide=Lus10009678 locus=Lus10009678.g ID=Lus10009678.BGIv1.0 annot-version=v1.0 ATGGCGCAGGACGCTTCTGCTAACGGCGTTAGTTCGCCGAGGAGGCGAGCTGGTGGGTTGCTGAGGGACCAAGTCCAGCTGGTGAAGAGGAAAGATTCTG AGAAGAGGTTCGAGATTGCTGCCATAGAGGAAACTCTGTCGTTTGAGAAGGGGTTCTTCATAGTGATCAGGGCGTGTCAGCTGCTGGCTCAGAAGAACGA TGGGTTGATCATTGTTGGTGTGGCGGGTCCTTCTGGAGCTGGCAAGACTGTGTTCACTGAGAAAGTTTTGAACTTCATGCCTAGTGTTGCTGTGATCACC ATGGATAATTACAACGATTCCAGCCGCATTATTGATGGCAACTTTGATGACCCGAGGCTGACAGACTACAACACATTGCTCGATAACATCCGCGGTTTAA GAGAAGGGAAGCCTGTTGAAGTTCCCATTTATGACTTCAAGACAAGTTCCAGAATTGGTTACAGGACAGTGGAAGTTCCTAGCTCCCGCATTGTGTTAAT AGAAGGCATCTATGCATTAAGCGAGAAACTGAGACCATTGCTAGATCTTCGTGTGTCTATCACTGGAGGGGTTCACTTCGACCTCGTCAAACGTGTACTA CGTGACATCCAACGTGCTGGCCAAGAGCCTGAAGAGATCATTCATCAGATCTCTGAAACGGTTTATCCAATGTACAAGGCGTTCATTGAGCCCGATCTCA AGACTGCCCATATCAAGATCATCAACAAGTTCAATCCTTTCACTGGATTCCAGAGTCCTACTTATATTCTCAAGTCAGCAAGGTCTGTAACAGATGAGCA AATAAAGGCTGTTCTTTCTGAAGAGCACAGCGAGAAAACAGAAGAAACTTATGACATCTATCTTCTGCCTCCCGGTGAAGATCCAGAAGCATGCCAGTCG TATTTGAGGATGCGGAACAGGGATGGGAAATACAATCTCATGTTCGAGGAGTGGGTTACAGACAGTCCGTTCATAATCTCGCCCAGGATAACTTTCGAAG TTAGTGTCCGCCTTCTGGGAGGATTGATGGCTTTGGGGTATACAATCGCGGCCATACTGAAACGGAGTAGCCATGTGTTTCATGATGATAAGGTCTGCGT CAAGACTGACTGGTTAGAACAACTCAACCGGCAGTATGTTCAGGTGCAAGGTAGAGACCGGGCGTACGTTAAACATGTTGGGGAGCAGCTTGGCTTAGAC GGTTCATACGTTCCTCGAACATACATAGAACATATTCAGCTGGAAAAGCTTGTGAATGACGTCATGGCACTGCCTGATGATTTGAAGACGAAACTAAGCA TTGATGATGATTTGGCTTCAAGCCCAAAAGAAGCCCTTTCTCGAGCTTCTGCAGACAGGCGAAACAAGCATCTTAGCCGTGGGATGTCGCAATCGTTTTC AGATAGACGCGACAAGAATATGTCGAGACTGACGAGGCTCGCGGTGAATAATAGACCATTTGATGGGGGGAATATGGTGGAGTCACCTACTAGTCTGTCT ACACAGGGCGTTATTGCGCAGCTATCGGACCAGATCTCGACCCTGAACGAGCGGATGGACGAGTTTACATCCCGACTCAAAGACCTCAATTCCAAGTTGA GTGTCAGGAAAGTCTCGGCAGCTAGCCAGCAAAACCTGGTTTTACCTTCTGAACCTTGCAATGGCGTCACCGGACCACCTCCTACTATCTTTGTCAGTGG GATTCCGAACGGTTCGCTGAGTGGATCGCTGATACCTCATTCTTCGTCTTCGTCGCAACTGGCCAAAGAGTCTCAACTCATGGATGAGCTTCTGCAGGTC GCTCGCGGACAGCGCCAAATCCTGCACCAGCTAGACAACCTTAGCAACCTGGTGCACGAGTGCTGGGGCGAACAGGCTCGTAAAGAACGAACCGAACGGT CGAGTAGTAGTCTGATGATCGAACCAGACTCGACCGTCATTCCTCTGATAGTGACCCTAGCAATCGGCGGTCTAGGCGTGCTTTTATTCAGAGGCCTCAA GTGA
AA sequence Show only first row Show all	>Lus10009678 pacid=23140039 polypeptide=Lus10009678 locus=Lus10009678.g ID=Lus10009678.BGIv1.0 annot-version=v1.0 MAQDASANGVSSPRRRAGGLLRDQVQLVKRKDSEKRFEIAAIEETLSFEKGFFIVIRACQLLAQKNDGLIIVGVAGPSGAGKTVFTEKVLNFMPSVAVIT MDNYNDSSRIIDGNFDDPRLTDYNTLLDNIRGLREGKPVEVPIYDFKTSSRIGYRTVEVPSSRIVLIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVL RDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQSPTYILKSARSVTDEQIKAVLSEEHSEKTEETYDIYLLPPGEDPEACQS YLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVCVKTDWLEQLNRQYVQVQGRDRAYVKHVGEQLGLD GSYVPRTYIEHIQLEKLVNDVMALPDDLKTKLSIDDDLASSPKEALSRASADRRNKHLSRGMSQSFSDRRDKNMSRLTRLAVNNRPFDGGNMVESPTSLS TQGVIAQLSDQISTLNERMDEFTSRLKDLNSKLSVRKVSAASQQNLVLPSEPCNGVTGPPPTIFVSGIPNGSLSGSLIPHSSSSSQLAKESQLMDELLQV ARGQRQILHQLDNLSNLVHECWGEQARKERTERSSSSLMIEPDSTVIPLIVTLAIGGLGVLLFRGLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	0	1
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	7.2	0.9365
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	8.8	0.9169
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10007727 [exp]	13.3	0.9323
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	15.3	0.9288
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	15.7	0.9332
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	15.9	0.9243
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	17.7	0.8977
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	17.7	0.9021
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	18.5	0.9234
AT1G21400			Thiamin diphosphate-binding fo...		Lus10028648 [exp]	20.0	0.9220

Compare expression of checked genes

Lus10009678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.