Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73480 506 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1) AT1G18360 467 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1) AT5G11650 392 / 4e-135 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 157 / 9e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 157 / 3e-44 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G11090 155 / 7e-44 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 143 / 3e-39 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52760 141 / 2e-38 LysoPL2 lysophospholipase 2 (.1) AT2G39400 137 / 3e-37 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 135 / 2e-36 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009041 [exp] 704 / 0 AT1G73480 511 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10006043 [exp] 349 / 5e-118 AT5G11650 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000572 [exp] 347 / 3e-117 AT5G11650 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 149 / 4e-41 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 145 / 7e-40 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 145 / 1e-39 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 144 / 3e-39 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 143 / 3e-39 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 143 / 3e-39 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031900 [exp] 543 / 0 AT1G73480 504 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G041800 [exp] 540 / 0 AT1G73480 510 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G045800 [exp] 367 / 2e-125 AT5G11650 540 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G237200 [exp] 360 / 1e-122 AT5G11650 483 / 4e-171 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 174 / 7e-51 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 154 / 1e-42 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 149 / 4e-41 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 145 / 5e-40 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 140 / 3e-38 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 140 / 6e-38 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10009679 pacid=23140055 polypeptide=Lus10009679 locus=Lus10009679.g ID=Lus10009679.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGCGGCGGCGGCGACGACGCAATCCCTAATGCTGACGTCGGGAGCTAGCGGAAGGATCAACGCGCTGTTGTCCGTGAGGGCGTTGAAGA GCCTTCTGGCGTTGATCCACGCGGTGGTCATTTTATTCCTCTTGCCGTTTCGTGGCGTCGCGCGGCGGCGGAGTACGGCGGTGGGCGGAGGAGGCTCCGC CGGTGTTGGTGGTGGTGGGAGCGAGAAGGGAGGAGGGGTAAGGGCGGCGAATGTTGTGGTGCCGTGGAAGAAGAGCAATGGGAATGGAAATGGCGGGAGA GCTATGGCGGCGATGGTGGATCAGGAGGTGGCGGCGAGGAGGACGATTGCTATGAGGAGGGTGTTGCAGGATGATGATCCTGAGACAGTTAGGGATTTCT CCATGTTCGTTACTGCTAGAGGGGATACCGTGTTTACTCAGTCTTGGTTCCCTGTTTCTGGGGATATCAGGGGAGTAGTGGTTCTCATGCATGGCCTGAA CGAACACAGTGGCCGATACAACGAGTTTGCGAAGCAACTGAACCGGAACGGATACAAAGTCTACGGAATGGACTGGATTGGACACGGTGGAAGTGATGGA CTACATGCATATGTGCCTTCTCTAGATTACGCTGTATCTGATCTGAAATCGTATCTAGACAAGGTCATGGCCGAAAACCCCGGGCTTCCATGTTTCTGCT TTGGACACTCCACTGGTGCAGCCATTGTTCTCAAGGCGGCTCTTGATCCAAAAGTTGAAGCCTCCCTTGCTGGAATGGTGCTCACTTCGCCTGCAGTAGG AGTCCAGCCATCCCACCCCATTATAGTGTTACTGGCCCCGGTCTTCTCGGCGCTGCTACCGAGGTACCAGTTCAGCGCAGCGAACAAGAAAGGGATGCCG GTATCTAGAGACGCAGACGCCCTGATCGCCAAGTACACGGACCCTCTAGTCTACACCGGTTCGATACGAGTCAGGACAGGGTACGAGATCCTACGCAACA CGACCTACCTGCAGCAGAATCTGAACAGGTTTAAAGTCCCCTTCTTGGTCCTCCACGGCTCAGCAGACACGGTCACCGACCCCGAAAGTTCTAAAAAATT GTACGACGAGGCGTCATCTACTGACAAGACGATCAAGCTGCTCGAAGGGTACTTGCACGACCTGCTTTTCGAACCTGAGCGGCAGGATATCATGGACTGC ATCATTGAATGGCTTAACAGCAGAGTATAG
AA sequence Show only first row Show all	>Lus10009679 pacid=23140055 polypeptide=Lus10009679 locus=Lus10009679.g ID=Lus10009679.BGIv1.0 annot-version=v1.0 MAAAAAAATTQSLMLTSGASGRINALLSVRALKSLLALIHAVVILFLLPFRGVARRRSTAVGGGGSAGVGGGGSEKGGGVRAANVVVPWKKSNGNGNGGR AMAAMVDQEVAARRTIAMRRVLQDDDPETVRDFSMFVTARGDTVFTQSWFPVSGDIRGVVVLMHGLNEHSGRYNEFAKQLNRNGYKVYGMDWIGHGGSDG LHAYVPSLDYAVSDLKSYLDKVMAENPGLPCFCFGHSTGAAIVLKAALDPKVEASLAGMVLTSPAVGVQPSHPIIVLLAPVFSALLPRYQFSAANKKGMP VSRDADALIAKYTDPLVYTGSIRVRTGYEILRNTTYLQQNLNRFKVPFLVLHGSADTVTDPESSKKLYDEASSTDKTIKLLEGYLHDLLFEPERQDIMDC IIEWLNSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009679 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025901 [exp]	12.0	0.9543
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	20.3	0.9519
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	20.6	0.9536
AT2G42360			RING/U-box superfamily protein...		Lus10005275 [exp]	23.4	0.9170
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	24.4	0.9535
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003266 [exp]	27.7	0.9415
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	28.1	0.9530
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	32.0	0.9528
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	36.4	0.9507
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	41.1	0.9513

Compare expression of checked genes

Lus10009679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.