Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18260 1000 / 0 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) AT1G73570 798 / 0 HCP-like superfamily protein (.1) AT1G70590 44 / 0.0003 F-box family protein (.1) AT2G25570 41 / 0.001 binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009042 [exp] 1288 / 0 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009047 [exp] 178 / 4e-52 AT1G18260 162 / 8e-47 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10026694 [exp] 54 / 1e-07 AT1G70590 412 / 1e-144 F-box family protein (.1) Lus10004621 [exp] 44 / 0.0003 AT1G70590 337 / 1e-116 F-box family protein (.1) Lus10009046 [exp] 0 / 1 AT1G18260 50 / 5e-12 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038100 [exp] 1076 / 0 AT1G18260 994 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.012G046300 [exp] 1068 / 0 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Potri.008G187200 [exp] 49 / 6e-06 AT1G70590 405 / 5e-142 F-box family protein (.1) Potri.010G045300 [exp] 44 / 0.0002 AT1G70590 434 / 2e-153 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10009680 pacid=23140050 polypeptide=Lus10009680 locus=Lus10009680.g ID=Lus10009680.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGCTCCGGTTCACGAACAGGATTCCCGCACTCTGTGTTCTCCTCCTAATCGCGGTTCTTCTTCAACCCATCTCAACCGCAGCTCGTCCAT TCGTCCTCGTCCTCTCACAGGACGACCTGAAAGAAGTGCCCGCTTCTCCATCCGATGCCGACGATCCATCATCCGCCGCTGATACACCGCCGGAGTGGGA TGAGTTCGGAGACTCCGATTCCAAGCCGGAGCACCTGCTGGACCCTGGCTCGTGGCGCCCAATATTCGAGCCGGACTCAACCCCGGGGGCCGATCCAGTC GACGGCGAGATGGCAGGTTATTACGAGATCGTCGGGAAGATGCTGTCGGCTGTGTCCGAGGGTGAGATCAGGATGATGGAGGAAGCGGCGGCGGATATCG AGGTTGCCGCGAAGGAGAAAGGGAATCCCCACGCTCAGTCGCTGCTGGGGTTCTTAGTGGGTATGGGACAGATGCGGGAGATGAATAAGGCCAAGGCGTT TCTGTATCATCATTTTGGCTTCAATGGAGGAAATATGCAGTCGAAGATGGCGCTTGCTTACACTTACTCACGTCAGGATATGTACGATAAGGCGGTGAAG ATATACGCCGAGCTAGCGGAAGTGGCAGTGAACAGTTTCCTGATCTCCAAAGATTCGCCTGTGATTGAGCCTGTTAGGATTCACAACGGAGCAGAGGAGA ACAAGGAAGCTCTGAGGAGGTTTAAGGGAGAGGATGATGAGGATTTCCAGATTCTGGAGTATCAGGCTCAGAAGGGGAATGCTGCAGCTATGTACAAAAT TGGTCTCTTTTACTACTTTGGGCTGAGAGGATTGAGGCGTGACTATGTCAAGGCTTTGACTTGGTTCTCTAAGGCCGTGGAGAAAGGGGAGCCTAGATCA ATGGAGCTTCTTGGTGAGATTTACGCCCGGGGAGCTGGTGTTGAGAGGAACTATACTAAAGCACTGAAATGGCTTACTCTTGCTTCCAGACAGCAGCTTT ACTCTGCGTATAATGGCATGGGGTATCTCTATGTTAAAGGGTATGGAGTAGAGAAGAAGAACTACACCAAAGCGAAAGAATACTTCGAGAAGGCAGCTGA CAATGATGAACCAGGGGGCCACTATAACCTAGGAGTTATGTACCTTAAAGGAATTGGTGTGAAGAGAGACATAAGGCGGGCTTGTCAGAGCTTCATAGTT GCTGCTAATGCCGGTCAACCCAAGGCGTTTTATCAGCTGGCCAAGATGTTTCATACTGGTGTTGGACTTAAGAAGAACCTAGCTATGGCTACTGCGTTAT ATAAACTAGTCGCAGAACGAGGGCCGTGGAGTTCCTTGTCTAGATGGGCACTAGAATCCTACCTTAAAGGCGACATAGGCAAGGCATTTCTATTATATTC GAGGATGGCCGAGATGGGGTACGAGATAGCCCAAAGTAACGCTGCATGGATCCTCGACAAATACGGAGAAAGAAGCATGTGTATAGGCGAATCCGGTTTT TGTACTGATGCAGAAAGGCATCAGCGAGCACATTCGTTGTGGTGGCAAGCTTCAGAGCAGGGCAACGAACACGCTGCATTATTGATCGGTGATGCATATT ACTACGGCCGGGGTACAGAAAGGGACTATGAACGAGCGGCGGAAGCATACATGAATGCAAAGTCTCAGTCCAACGCACAAGCCATGTTCAACCTTGGTTA CATGCACGAGCATGGACAGGGTCTTCCGCTCGATCTTCATCTCGCTAAGCGTTACTACGATCAGGCGCTAGAAGTCGATCCTGCTGCGAAATTACCCGTG ACGCTCGCTCTGGCAAGCTTGTGGGTTCGAAAGAACCATGCCGACAGTTTCATGGTCGGCATGATCGATTCGCTGCCTGAAGTGTTCCCGAAAGTCGAGG CATGGGTGGAAAGCGTGATCATGGAAGAAGGAAACGCCACGATATTGACTCTCTTTGTCTGTCTTCTAACGGTTCTCTACCTTCGTGAACGACAACGCAG AAACGTTGCCGCTGCAGCTGGCGCCGTTGACGGCGCTGTACCGCCGCACCAACCGGTCGAGCAGGATATACCTCCGGTCAACTGA
AA sequence Show only first row Show all	>Lus10009680 pacid=23140050 polypeptide=Lus10009680 locus=Lus10009680.g ID=Lus10009680.BGIv1.0 annot-version=v1.0 MKKKLRFTNRIPALCVLLLIAVLLQPISTAARPFVLVLSQDDLKEVPASPSDADDPSSAADTPPEWDEFGDSDSKPEHLLDPGSWRPIFEPDSTPGADPV DGEMAGYYEIVGKMLSAVSEGEIRMMEEAAADIEVAAKEKGNPHAQSLLGFLVGMGQMREMNKAKAFLYHHFGFNGGNMQSKMALAYTYSRQDMYDKAVK IYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRRFKGEDDEDFQILEYQAQKGNAAAMYKIGLFYYFGLRGLRRDYVKALTWFSKAVEKGEPRS MELLGEIYARGAGVERNYTKALKWLTLASRQQLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAADNDEPGGHYNLGVMYLKGIGVKRDIRRACQSFIV AANAGQPKAFYQLAKMFHTGVGLKKNLAMATALYKLVAERGPWSSLSRWALESYLKGDIGKAFLLYSRMAEMGYEIAQSNAAWILDKYGERSMCIGESGF CTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTERDYERAAEAYMNAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEVDPAAKLPV TLALASLWVRKNHADSFMVGMIDSLPEVFPKVEAWVESVIMEEGNATILTLFVCLLTVLYLRERQRRNVAAAAGAVDGAVPPHQPVEQDIPPVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	10.4	0.7879
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	10.5	0.7793
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	11.7	0.7853
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	15.5	0.7596
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	18.7	0.7560
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10019914 [exp]	21.5	0.7704
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	23.9	0.7126
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10003065 [exp]	26.5	0.6702
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10032521 [exp]	27.9	0.7850
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10043437 [exp]	27.9	0.7435

Compare expression of checked genes

Lus10009680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.