Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48570 334 / 2e-111 zinc finger (Ran-binding) family protein (.1) AT1G70650 209 / 7e-63 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 164 / 2e-44 zinc finger (Ran-binding) family protein (.1) AT5G17790 112 / 2e-26 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT2G26695 56 / 2e-09 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 51 / 1e-07 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 50 / 6e-07 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT1G53460 44 / 0.0001 unknown protein AT2G17975 44 / 0.0001 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009049 [exp] 751 / 0 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 210 / 9e-63 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10003580 [exp] 169 / 2e-48 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015180 [exp] 130 / 1e-32 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 107 / 9e-25 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 103 / 2e-23 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 100 / 3e-22 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 61 / 2e-10 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 60 / 2e-10 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038200 [exp] 371 / 9e-126 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 346 / 6e-114 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 209 / 3e-62 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.005G033000 [exp] 165 / 1e-44 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 154 / 9e-41 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 130 / 2e-32 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.018G066900 [exp] 59 / 3e-10 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 56 / 4e-09 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G149900 [exp] 54 / 7e-09 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G376900 [exp] 54 / 6e-08 AT1G53460 254 / 3e-83 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10009681 pacid=23140085 polypeptide=Lus10009681 locus=Lus10009681.g ID=Lus10009681.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCCAGATTCTCCCTCTTCGGAGCTTCACTCTTCTACAAAAACACCATTCCCCGGTCAAATTTCGTCCTCCCAGTCGCTCCTTTCCCCTCCG CGAAGCCTATCCACTTCCAGCAACACTCATGTTCCACGGCCACCGCCGTAGCCGCCGCCGAGAACTTGAGTCCGCATCCATGGCCCGAGTGGGTCGCCTT CGTCAACAGATTGAAAACCAAAGGCTACTTATTGGAGCCCAAGACGCCTGCAACGGACCAAACCAGCGAGGCCGACACGCCAGAGATTCAAACAGTGGTG GCTACTGGCTGCCCGAACCTGTTGAGGAAGGCTGTGAATTCTGGCAAAAGGTTGAGAGCATATCTGCAATTGGATGAAGGCGATGTCTGTGGTGTGTGCA ATCTCCGGGGCTCCTGTGACAGAGCGTACGTGATACTGAAGGACAACGAAGCCGAAGCAAGGACGGTGGACTTGGTCCGGATCCTGATGTTCTATGCATT GGATCCGATTGTTATATCGGATGGACAGAGACCTGCTGGTAGAGAGACTGTGGAAGAAGCTGCTAGAAAGCTGCTCTCTGAGATGGTTGTGTTGAGTGAA AAGACAGCTGATCCTGCACCAATGAAGCCAGTTGCTACAAAAAAGGTTCAAGCGGTTCGCAAGCCTGACAGTAAAGCGACAGCCATCTACCTGAACTTAG GTGACAGAGAACGATCGGTGTCTGAGAATGTTGAGATGAAGAGAGGAGACTGGATGTGTTCCAAGTGCAACTTCTTGAACTTTGCGAGGAACAAACGATG CTTGAAATGCAGCGAAGAAGGTCCGAAGAGTGCCCCTCCTGTTGATTTCGAAATGAAGAAAGGAGATTGGCTGTGTTCTGAGTGTAACTTCGTAAACTTT GCCAGAAACTCCAGCTGCCTCAAGTGCAATGGTTCGAGGCCAAAACGGGTTGGAGTTGCTGATGTTGAAATGAAGAAAGGAGATTGGAACTGCCCACAGT GTTCGTTCATGAACTTTGCAAGCAACAAGGCGTGTCTGTCGTGCAAAGGGCAACGGCCCAAGCTTGTGATGGGGGACTGGGAATGCTCGTCGTGTGGGTA CTTCAACTACGGCAGAAACGCAGCGTGTCTGAAGTGCAAGACTGGTAAGCCCGATTCGGGTACGAATAAGAAGAGCAATTTTGTCGACGAATCTGCTGCA GATTACGAGTGGAAACGCCCCGAGTAG
AA sequence Show only first row Show all	>Lus10009681 pacid=23140085 polypeptide=Lus10009681 locus=Lus10009681.g ID=Lus10009681.BGIv1.0 annot-version=v1.0 MAAARFSLFGASLFYKNTIPRSNFVLPVAPFPSAKPIHFQQHSCSTATAVAAAENLSPHPWPEWVAFVNRLKTKGYLLEPKTPATDQTSEADTPEIQTVV ATGCPNLLRKAVNSGKRLRAYLQLDEGDVCGVCNLRGSCDRAYVILKDNEAEARTVDLVRILMFYALDPIVISDGQRPAGRETVEEAARKLLSEMVVLSE KTADPAPMKPVATKKVQAVRKPDSKATAIYLNLGDRERSVSENVEMKRGDWMCSKCNFLNFARNKRCLKCSEEGPKSAPPVDFEMKKGDWLCSECNFVNF ARNSSCLKCNGSRPKRVGVADVEMKKGDWNCPQCSFMNFASNKACLSCKGQRPKLVMGDWECSSCGYFNYGRNAACLKCKTGKPDSGTNKKSNFVDESAA DYEWKRPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009681 [exp]	0	1
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10040273 [exp]	1.0	0.6533
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10032401 [exp]	9.6	0.6183
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	17.5	0.5905
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	28.8	0.6133
AT2G35030			Pentatricopeptide repeat (PPR)...		Lus10022655 [exp]	32.6	0.6120
AT5G02050			Mitochondrial glycoprotein fam...		Lus10012653 [exp]	45.1	0.5828
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	50.9	0.5722
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10037513 [exp]	70.7	0.4890
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10015875 [exp]	74.1	0.5191
AT2G17580			Polynucleotide adenylyltransfe...		Lus10035995 [exp]	79.8	0.5385

Compare expression of checked genes

Lus10009681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.