Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17970 671 / 0 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 538 / 0 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G08980 337 / 4e-110 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT1G56440 94 / 4e-20 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 86 / 2e-17 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 83 / 4e-17 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 77 / 1e-14 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62740 74 / 1e-13 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G12270 72 / 3e-13 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G12400 70 / 2e-12 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009050 [exp] 1013 / 0 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 848 / 0 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 824 / 0 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10029941 [exp] 355 / 4e-117 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10004466 [exp] 343 / 1e-112 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10031418 [exp] 93 / 8e-20 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 84 / 5e-17 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 84 / 6e-17 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041189 [exp] 80 / 6e-16 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038600 [exp] 742 / 0 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 739 / 0 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 529 / 0 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.013G024200 [exp] 369 / 1e-122 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 355 / 5e-117 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G008400 [exp] 94 / 2e-20 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 94 / 3e-20 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G177400 [exp] 83 / 1e-16 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G156500 [exp] 79 / 1e-15 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G141800 [exp] 77 / 1e-14 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10009682 pacid=23140022 polypeptide=Lus10009682 locus=Lus10009682.g ID=Lus10009682.BGIv1.0 annot-version=v1.0 ATGGCTCCATCTTCCTCCTCCGTACCTGCCAATCTATTCGTCCTCCTCGGGCTAGGTCTCGCCGGGATTCTGATGCTGACTAAGAAGTTGAAGAAAGCTG TCCGAGAAGACTTCGGCGCCTTCGTCCAGAAGCTTCAGCTCCTCCCGCCGCCTCAGCCGGCGCCGCCCAAAGCTCGCCATACTCTCACTGGACTCACGTT CGCTGCCTCCGACGTGTTTGACATTGAAGGGTTCGTGACTGGTTTTGGGCATCCCAATTGGGCAAGGACGCATGGGGAAGCTTCTAAGACGGCTGGCGGC ATTTCGAATCTTGTTGAAGGAGGTGCTACTTGTGTAGGGAAAACTGTTGTCGACGAACTTGCTTATAGTATCAATGGAGAAAATAAACATTATGGTACAC CTACAAATCCCGCAGCTCCTGCTTGTGTGCCCGGTGGATCTTCAAGTGGAGCAGCTGTCGCTGTAGCTGCTAAGCTTGTAGATTTTTCATTAGGCATTGA TACAGTTGGTGGTGTAAGAGTGCCTGCTGCATTTTGTGGGGTAATAGGGTTCCGGCCGTCACATGGAGTTCTTTCAACCATTGGAATGTTAACGGTTTCA CCAAGTCTCGATACAGTTGGATTGTTTGCCAATGATCCAGATATTCTACGACGTGCCGGTCATGTGCTCTTTCAACTTCCATTTGCTGTGCAACGTAAAC CTCGGCAAATAATAATAGCTGATGACTTTTTTGAACTACTCGAGATGCCAGCCAACAAGCTTGCTCAGGCATTAATCAATTCCACCGAGAAGCTATTTGG AAGACAAGTGGTGAAGCATGCAAACCTTGATGAGTTTCTCTCTTCTAATGTTCCAAGCTTGAAAAAGATTCATACAGAAAAGACAAATGGCAAAGTGAAA ACTTCTTCTGTGAAAATGCTGGCAAATATAATGGACATTCTTAATAAATACGAGTTCAATGATAGTCACAAAGAGTGGTTGAAAACAGAAAAGCCCATCC TTGATCCTTTTATCTCTGCACAATTGACTGATGCGGTAGAGATTTCTGATACAATGACTGAAACATACAGATCTATGAGAAATGAAATGCGTGCCGCCAT TGACTCTCTGTTAAAGAACGACGGAATTCTGGCAATCCCCACAACAGCTGATTTCCCTCCTAAACTCAATGCCAAAGAGATGTTTTCAGAGGACTACAAG TCACGCTCGTTTAGCCTGTTGAGTCTTGCTAGCCTCTCTGGTTGTTGTCAGGTGACAATCCCAGTAGGGAAGCATGACAAGAGCCCTACTTCAGTTTCGT TAATAGCCCGACATGGGGGTGATCGCTTTTTACTAGACACTTTGCAGAGCATATATGCGTCTGTACAAGAGCAAGCTGAAGCTCTTCTTACCTCCAAACA ATCCAGTAATTCTGACAACCGGGGATCATCTGCTGATGCGGCAAAGGAGAAGGGAAACCAAGCATTCAAGGATAAGCAATGGAAGAAGGCTATCGGGTTT TACACAGAAGCTATCAAACTTAATGACAGAAACGCAACTTATTACAGCAACAGAGCTGCAGCTTATCTCGAAATTGCAGGGTTTCTTCAGGCTGAGAATG ATTGTTCAACAGCTATTGACCTCGACAAAAAGAACGTGAAGGCTTATCTGAGAAGAGGCACAGCAAGAGAAATGCTTGGCTATTACAAGGACGCTATGGA AGATTTCGGGCACGCATTGGTGCTCGAACCGACTAACAAAAGGGCAGCAGCTTCTGCAGAGAGACTGAGAAAGGTGTTCCAAATAGGTGGTTGA
AA sequence Show only first row Show all	>Lus10009682 pacid=23140022 polypeptide=Lus10009682 locus=Lus10009682.g ID=Lus10009682.BGIv1.0 annot-version=v1.0 MAPSSSSVPANLFVLLGLGLAGILMLTKKLKKAVREDFGAFVQKLQLLPPPQPAPPKARHTLTGLTFAASDVFDIEGFVTGFGHPNWARTHGEASKTAGG ISNLVEGGATCVGKTVVDELAYSINGENKHYGTPTNPAAPACVPGGSSSGAAVAVAAKLVDFSLGIDTVGGVRVPAAFCGVIGFRPSHGVLSTIGMLTVS PSLDTVGLFANDPDILRRAGHVLFQLPFAVQRKPRQIIIADDFFELLEMPANKLAQALINSTEKLFGRQVVKHANLDEFLSSNVPSLKKIHTEKTNGKVK TSSVKMLANIMDILNKYEFNDSHKEWLKTEKPILDPFISAQLTDAVEISDTMTETYRSMRNEMRAAIDSLLKNDGILAIPTTADFPPKLNAKEMFSEDYK SRSFSLLSLASLSGCCQVTIPVGKHDKSPTSVSLIARHGGDRFLLDTLQSIYASVQEQAEALLTSKQSSNSDNRGSSADAAKEKGNQAFKDKQWKKAIGF YTEAIKLNDRNATYYSNRAAAYLEIAGFLQAENDCSTAIDLDKKNVKAYLRRGTAREMLGYYKDAMEDFGHALVLEPTNKRAAASAERLRKVFQIGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	0	1
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	1.0	0.8938
AT1G28530			unknown protein		Lus10015294 [exp]	2.4	0.8712
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	3.2	0.8538
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	4.0	0.8846
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	4.9	0.8787
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	9.8	0.8759
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	12.4	0.8638
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	13.0	0.8498
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	13.0	0.8515
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	13.0	0.8226

Compare expression of checked genes

Lus10009682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.