Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44900 942 / 0 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G46280 342 / 1e-100 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G07690 332 / 1e-97 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 321 / 8e-93 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 306 / 6e-89 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 296 / 2e-84 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G14050 280 / 1e-80 MCM9 minichromosome maintenance 9 (.1) AT3G09660 256 / 2e-71 MCM8 minichromosome maintenance 8 (.1) AT1G48580 180 / 2e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009052 [exp] 1170 / 0 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009051 [exp] 627 / 0 AT1G48580 204 / 6e-61 unknown protein Lus10015267 [exp] 343 / 2e-97 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 324 / 3e-94 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 308 / 2e-88 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10002427 [exp] 301 / 5e-87 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10019592 [exp] 299 / 1e-86 AT2G07690 1075 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10001452 [exp] 298 / 5e-86 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10040017 [exp] 297 / 6e-86 AT2G07690 1060 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070500 [exp] 1074 / 0 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 343 / 4e-101 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G188700 [exp] 330 / 4e-97 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 323 / 1e-94 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.014G121000 [exp] 310 / 2e-90 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.009G121500 [exp] 300 / 1e-85 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G074000 [exp] 295 / 4e-84 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.019G014403 [exp] 281 / 8e-81 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.006G131900 [exp] 282 / 6e-80 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.012G047000 [exp] 223 / 4e-63 AT1G48580 261 / 3e-82 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10009683 pacid=23140107 polypeptide=Lus10009683 locus=Lus10009683.g ID=Lus10009683.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGAAGAAGAAGCTTGGGAAGAAGCGTTCGATCTCGACGATTCCGATCTCTCTCTTCTCCGCCCTCTCAAACGCCACCACCAGCCACCAA AACCCCCCGCCGACTCTTCCGCCGGCGTCGGCGGCAGTTCCTCTAGATCCGAACCATTTCTCGGGCGCTGTTCTTCTTCTTCTTCAACTTCCCTTTCTCT ATCTTCCCAAACTTCGGGGCACTGCCGGTCCGAGCCGAACTCTTCACAGCGTCTTTGCGGAAGTATCTCTAGATCCGAACCGTTTCTCAGGGTTTTTTCT TCTTCTTCAACTCCGCTCGCTCGATCTTCACAAACTTCCGAGCATCACCGACTCGAAGGGAACTCCTCGCCGCAGCTCCGTGTGATTCCTGGTCCCGCTG GAATCTTGCAAGCAGCCATGCACAGGAGGAAGGAGCAGCGCAACGACGTATTGGTATGCCAGGGGCAGGAGCCGGTAACTACTCAGGAGTATGTCAGGAG AGCTGTGGAGGACTGTGGCGCCGATGGTGACGATTTCCAGGGCGAACCTTGGCTCAGTGCCGTTGATTTCGTCCGCCGTAAAAGGTTAGTGGATGATGAT GGTGAGATCGGGATGCCTTTGAGCTTGGTCAAGAGCTTGAAGGCTGCTCACAAGGCACCTCGGGTTATTGCTGTTGTTAAATCCTGTACCTCAAATGGTC TTGGTGATCTGATGGTAAATCTAAAGGATCCTACTGGATGTGTTGATGCTAGTATTCATCGGAGAGTACTAAGAGAAGTCGAGTCGGGGAAGGACATATC CGTTGGAGCTGTGCTCATAGTGAAAGAGGTTGCAGTTTTCTCCCCTTCACGCTCTTCACATTACCTGAACATAACACCAAGCAATGTGGTCAAGATCTTC TCTAAGGACTACACGTCAGTGAGAGCACCATTGGAAGAGGTCCACACTAGTCTAATATCTGACACCAGACATCAAACATCAAATCCACAGACACAGACAC ATACTCGAACCAATCCATCACAAACCTTAGGAATCCTTAACAATCTCAAACGAAACGCCAACTCGCTCGAGAGGAGCCAACGCCAGAAGAAAATGCCTCC TACTGGAAGGCCAGAAGTTGTCACACTGAAAGAACAACCGCTGCAGGCAGCTGACAAGGATCGACAAGGATCGAAAGCAGTAGCTATGGACGAGGATTGT ATCGTGTACGAGCTTGAGGATGGCAGAAGCCAATGCAACAATGTCACTCTAGCAGATGGCGTGATTAGCACACAAGCGAATCTCGAGAACAGTAGCCAGG CAGTGAAGCAGTCTGAAGCCTGTCTCTTAAAGCTACAAAGACTGAGAAGCCCAGCCCAATCACAGAATTGGCGCGAACATTTGCCGCCAAAAGTAACCCT TCATGGCGGGAGTATCAGTAAAGTGGTGGTGGAAGCATTCTTAGAGGACTCCATTTTTGCTCTGCCGGAAAATCAAAATTTTCCTAAAGGTGTGAGCGGA AAAACACAGCAGAAAAAAGGAAGAAAAAAATGGCGTCGCCGCCTCCGAATTCGGGCAACCTACCGCCGTCGAGTCCGGATTTCCAGACCCCGGCGGGTTT CCACACCGACGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGGTGAAATATGACTGTAACAAATGTGGGGCTGTCTTGGGACCCTTTTTCCAG AATTCATATTCGGAAGTCAAGGTTGGTTCTTGCCCTGAGTGCCAGTCAAAAGGGCCATTTACCGTCAATGTCGAGCAGACGATTTACAGGAACTACCAGA AGCTCACCCTCCAAGAAAGCCCGGGAATCGTCCCAGCAGGTCGGCTTCCAAGATACAAGGAAGTGATACTTTTGAATGACTTAATCGATTGTGCCCGCCC TGGTGAAGAGATCGAAGTGACTGGTGTATATACAAACAACTTCGACTTATCATTGAATACCAAAAACGGATTCCCTGTCTTTGCTACTGTGATTGAAGCA AACTACGTTACAAAGAAGCACGACCTCTTCTCGTCGTACAAACTCACCCAAGAAGACAAGGATGAGATTGAGAAGCTGGCAAAAGACCCACGAATCGGAG AAAGGATTGTCAAGTCCATTGCTCCATCTATCTACGGCCACGAGGATATCAAAACTGCAATTGCACTTGCAATGTTCGGAGGCCAAGAGAAGAACGTCCA AGGGAAACATCGACTTCGGGGTGACATCAATGTACTCCTACTAGGTGATCCAGGCACAGCAAAGTCTCAGTTTCTGAAGTACGTGGAGAAGACGGGCCAA AGAGCTGTCTACACAACTGGTAAAGGAGCTTCAGCTGTAGGTCTAACAGCAGCAGTCCACAAGGATCCAGTGACAAGAGAGTGGACCCTTGAAGGTGGTG CCCTTGTTCTAGCTGACAAAGGCATCTGCCTCATTGACGAATTCGACAAGATGAACGATCAAGACAGGGTCAGCATCCACGAGGCGATGGAGCAACAGAG TATAAGCATTTCAAAAGCTGGCATCGTTACGTCTCTTCAAGCTCGCTGTTCCGTCATTGCTGCTGCAAATCCCGTCGGTGGAAGATACGATTCATCAAAG ACATTCGGGCAGAATGTTGAGCTGACCGATCCAATCGTTTCTCGTTTCGACATCCTATGTGTAGTTAAGGATGTGGTGGACCCCGTGTTAGATGAGATGC TTGCGAAATTTGTGGTCGACAGTCACTTCAAGTCACAAGCCAAGGGTGCCACCATCGACGACAGGTCCATGAACGAGTCCCAAGAAGACAGCCAAGCCAC TTCTGGCCCTGTCGATCCAGACATTATCCCTCAAGATATGCTGAAGAAATACGTATCCTACGCCAAACTTAACATCTTCCCAAGGCTACACGACTCCGAC ATGGAAAAGCTTACTCAAGTGTACGCTGAACTGCGTAGGGAATCCGCACACGGGCAAGGAGTTCCGATAGCGGTAAGGCACATCGAATCGATGATAAGGA TGTCCGAGGCACACGCCAGGATGCACCTAAGGCACCACGTGACAGCAGAAGATGTGGACATGGCGATTCGAGTCCTCCTCAGCTCGTTCATATCGACTCA GAAGTATGGAGTTCAGAGAGCCTTACAGAAGAGCTTCAGAAAGTACATCACGCTGAAGATGGATTACAACAGAACGCTGCTGAATCTCCTGCGAGACCTC GTGAAACGAGCCCTCCGATTCGAAGAGATCATCTCGGGTGCCAACGCCTCGAGGCTTACACACATCGATGTGAAGATTCAGGATCTCCAAACCATGGCTG AGGAACGCGAGATAACTGACTTGAAGCCATTCTTCTCCAGCAGCGAGTTTTCAGCAGCCGATTTCAAGCTTGTCGAAGATCGACATGTTATAAGGCATCG CCTTCATTAG
AA sequence Show only first row Show all	>Lus10009683 pacid=23140107 polypeptide=Lus10009683 locus=Lus10009683.g ID=Lus10009683.BGIv1.0 annot-version=v1.0 MAEEEEEAWEEAFDLDDSDLSLLRPLKRHHQPPKPPADSSAGVGGSSSRSEPFLGRCSSSSSTSLSLSSQTSGHCRSEPNSSQRLCGSISRSEPFLRVFS SSSTPLARSSQTSEHHRLEGNSSPQLRVIPGPAGILQAAMHRRKEQRNDVLVCQGQEPVTTQEYVRRAVEDCGADGDDFQGEPWLSAVDFVRRKRLVDDD GEIGMPLSLVKSLKAAHKAPRVIAVVKSCTSNGLGDLMVNLKDPTGCVDASIHRRVLREVESGKDISVGAVLIVKEVAVFSPSRSSHYLNITPSNVVKIF SKDYTSVRAPLEEVHTSLISDTRHQTSNPQTQTHTRTNPSQTLGILNNLKRNANSLERSQRQKKMPPTGRPEVVTLKEQPLQAADKDRQGSKAVAMDEDC IVYELEDGRSQCNNVTLADGVISTQANLENSSQAVKQSEACLLKLQRLRSPAQSQNWREHLPPKVTLHGGSISKVVVEAFLEDSIFALPENQNFPKGVSG KTQQKKGRKKWRRRLRIRATYRRRVRISRPRRVSTPTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVKYDCNKCGAVLGPFFQ NSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVIEA NYVTKKHDLFSSYKLTQEDKDEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVQGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQ RAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSK TFGQNVELTDPIVSRFDILCVVKDVVDPVLDEMLAKFVVDSHFKSQAKGATIDDRSMNESQEDSQATSGPVDPDIIPQDMLKKYVSYAKLNIFPRLHDSD MEKLTQVYAELRRESAHGQGVPIAVRHIESMIRMSEAHARMHLRHHVTAEDVDMAIRVLLSSFISTQKYGVQRALQKSFRKYITLKMDYNRTLLNLLRDL VKRALRFEEIISGANASRLTHIDVKIQDLQTMAEEREITDLKPFFSSSEFSAADFKLVEDRHVIRHRLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	0	1
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	1.0	0.9841
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	3.5	0.9628
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	4.5	0.9591
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	5.5	0.9513
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Lus10036319 [exp]	6.7	0.9493
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	7.1	0.9597
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	8.4	0.9505
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10011306 [exp]	9.0	0.9356
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	10.6	0.9502
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	12.4	0.9452

Compare expression of checked genes

Lus10009683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.