Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17980 254 / 3e-86 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 243 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT5G37740 239 / 1e-80 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G73580 233 / 3e-78 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 227 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 219 / 5e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G23140 204 / 9e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 203 / 3e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70800 199 / 7e-65 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G01540 197 / 6e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009053 [exp] 428 / 8e-154 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 261 / 5e-89 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10018005 [exp] 246 / 5e-83 AT3G17980 222 / 1e-74 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10033585 [exp] 231 / 1e-77 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017629 [exp] 228 / 5e-76 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10021775 [exp] 199 / 2e-64 AT1G70810 209 / 6e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001594 [exp] 184 / 3e-58 AT3G17980 187 / 7e-61 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10034591 [exp] 168 / 7e-53 AT1G70790 181 / 3e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10003710 [exp] 158 / 3e-49 AT1G48590 158 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047100 [exp] 258 / 3e-88 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.017G125500 [exp] 248 / 2e-84 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 246 / 2e-83 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 224 / 1e-74 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G131500 [exp] 223 / 4e-74 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G098500 [exp] 147 / 8e-43 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 142 / 7e-41 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.016G005300 [exp] 135 / 9e-40 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.006G004600 [exp] 134 / 2e-39 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G198301 [exp] 137 / 1e-37 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10009684 pacid=23140096 polypeptide=Lus10009684 locus=Lus10009684.g ID=Lus10009684.BGIv1.0 annot-version=v1.0 ATGCTGAGCTTCTCGCCGGCCAATCAGATCGAACGGCTATTTCGCTTCGGCTCGACTAAGAAGCCACCTACCCATCGCCACACTAAAAGCGATCCAGCGG AGCTTGACCAAGACCACTATAAAACGAATGGCGAGATAACGGACTCGCCAACTGGAGTAGCAAAATCAACGCCGCCGCCGCCGTCATCGTCGTCGCCTTC AGAAGCAATGACCGGAACACCTTCTTCGATGGAAAGCCTCCTAGGTCTCCTCCGCATCCGAGTCAAGCGTGGCATCAACCTCGCCGTCCGTGACGTTCTC AGCAGCGATCCTTACTGCGTCGTCCGGATGGGGAAACAGAAACTGAAGACTAGATTTGTAAAGAAGGATGTAAATCCAGAATGGAATGAAGATTTAACTC TGTCGATTATTGACCCAGAACTGCCCGTCAAGCTGACTGTGTACGACCACGACACGTTCAGCCTAGACGACAAAATGGGGGACGCAGAGTTCGACATCAT ACCGTTCATGGAGGCACTACGCACAAACATCAAAGGCCTCCCGAACGGGACCATAATCAAAAAGCTACAGCCAAGCAGGCAGAACTGCTTGTCCGAGGAG TCCAGCATCACATGCTCTGATGGGAAGATCCTCCAGGACATGTGCCTCAGACTTAGAAACGTGGAATCCGGAGAAGTCGAACTCCAATTGCAGTGGATCG ACCTCCCCGGTGCCAGGGGCTTTTAG
AA sequence Show only first row Show all	>Lus10009684 pacid=23140096 polypeptide=Lus10009684 locus=Lus10009684.g ID=Lus10009684.BGIv1.0 annot-version=v1.0 MLSFSPANQIERLFRFGSTKKPPTHRHTKSDPAELDQDHYKTNGEITDSPTGVAKSTPPPPSSSSPSEAMTGTPSSMESLLGLLRIRVKRGINLAVRDVL SSDPYCVVRMGKQKLKTRFVKKDVNPEWNEDLTLSIIDPELPVKLTVYDHDTFSLDDKMGDAEFDIIPFMEALRTNIKGLPNGTIIKKLQPSRQNCLSEE SSITCSDGKILQDMCLRLRNVESGEVELQLQWIDLPGARGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	1.4	0.8392
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	2.8	0.7973
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	3.0	0.8085
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	4.2	0.8102
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	5.2	0.7822
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	8.0	0.7427
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	8.1	0.7909
AT3G62190			Chaperone DnaJ-domain superfam...		Lus10038040 [exp]	8.5	0.7133
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	10.0	0.7954
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	11.4	0.7681

Compare expression of checked genes

Lus10009684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.