Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73590 509 / 3e-178 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT2G01420 432 / 9e-148 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 427 / 5e-147 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 424 / 2e-144 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT5G57090 407 / 6e-138 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 310 / 5e-101 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G16530 186 / 2e-55 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 164 / 5e-47 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009054 [exp] 652 / 0 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 406 / 3e-137 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 400 / 8e-135 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 378 / 1e-132 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 379 / 4e-130 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10012680 [exp] 210 / 2e-66 AT2G01420 245 / 8e-78 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042004 [exp] 208 / 3e-63 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 189 / 2e-56 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 188 / 4e-56 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047200 [exp] 546 / 0 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 544 / 0 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 462 / 5e-160 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 456 / 1e-157 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 447 / 2e-153 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 430 / 7e-147 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 429 / 3e-146 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 317 / 1e-103 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 306 / 1e-99 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 305 / 1e-99 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10009685 pacid=23140044 polypeptide=Lus10009685 locus=Lus10009685.g ID=Lus10009685.BGIv1.0 annot-version=v1.0 ATGATCACCGGAACAGACTTCTACCACGTAATGACGGCGATGGTCCCGCTCTACGTCGCAATGTTCCTCGCTTACGGCTCCGTCAAATGGTGGAAGATCT TCACCCCGGACCAGTGCTCCGGGATCAACCGATTCGTCGCTCTCTTCGCCGTCCCGCTCCTCTCCTTCCACTTCATCTCCTCCAACGACCCTTACGCCAT GAACTTCCGCTTCATCTTCGCTGATTCTCTCCAGAAGCTCATCATCCTCGCTGCCTTGGCCGTCTGGGCCAATCTATCCCGCCGCGGGACGCTTGAATGG TCGATTACTCTGTTCTCCCTCTCTACCCTCCCGAACACTCTGGTTATGGGGATCCCTTTGCTGAAAGGGATGTACGGTGACGAATCTGGAACGCTAATGG TTCAAATCGTCGTTCTCCAGTGTATAATCTGGTATACGCTGATGCTGTTCATGTTCGAGTTCCGTGGAGCGAGGATTTTGATCTCCGAGCAGTTTCCTGA TACCGCTGGTTCGATTGTTTCGATTCATGTCGATTCGGATATCATGTCGCTCGACGGGCGGATGCCGCTGGAGACGGAGGCGGAGATTAAGAGCGACGGG AAGCTCCACGTCACTGTACGGAGGTCGAACGCTTCCAGATCTGACGTTTTCTCGAGGAGATCCGGCACCGGAGCGACTCCTCGGCCGTCGAATCTGACGA ATGCGGAGATCTATTCGTTGCAGTCGTCGAGGAATCCGACTCCTCGGGGTTCGAGCTTTAACCATACGGATTTCTACTCGATGATGGCCGCCGGTCGGAG CTCCAATTTCGGGGCGAACGACGGCCCCACTCCTAGGCCGTCAAACTACGATGAGGATGGTAAAACGACGTCGTCTAATGCTGCGAGGTACGGGTACGGC GGCGGTCCTGCCGGGTCGGGTTATCCCGCTCCGAACCCGGGAATGTTCTCTCCGACTACTGCAGCTGGGAAAGTGAATAGTAATGTTAAGAAAGGAGGGA AAGAAGATGGCGGCGGTGGAAAAGATCTTCATATGTTCGTTTGGAGCTCCAGTAATTCGCCGGTTTCCGACGTGTTCGGCGGCCATGAGTACGCCGCCAG CGCCGGCGGAAATCATCATCAGTTGGGGGGGGCGAGAAGGCGACGGTGA
AA sequence Show only first row Show all	>Lus10009685 pacid=23140044 polypeptide=Lus10009685 locus=Lus10009685.g ID=Lus10009685.BGIv1.0 annot-version=v1.0 MITGTDFYHVMTAMVPLYVAMFLAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYAMNFRFIFADSLQKLIILAALAVWANLSRRGTLEW SITLFSLSTLPNTLVMGIPLLKGMYGDESGTLMVQIVVLQCIIWYTLMLFMFEFRGARILISEQFPDTAGSIVSIHVDSDIMSLDGRMPLETEAEIKSDG KLHVTVRRSNASRSDVFSRRSGTGATPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRSSNFGANDGPTPRPSNYDEDGKTTSSNAARYGYG GGPAGSGYPAPNPGMFSPTTAAGKVNSNVKKGGKEDGGGGKDLHMFVWSSSNSPVSDVFGGHEYAASAGGNHHQLGGARRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009685 [exp]	0	1
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10009686 [exp]	1.4	0.8163
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10022152 [exp]	4.6	0.8255
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	20.3	0.8069
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10007692 [exp]	24.7	0.8050
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	24.8	0.7954
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	25.5	0.7946
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	25.7	0.7608
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	26.5	0.8023
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	27.0	0.7857
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	27.9	0.7895

Compare expression of checked genes

Lus10009685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.