Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01420 290 / 4e-96 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT5G57090 285 / 7e-94 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G23080 280 / 4e-92 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 279 / 1e-91 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G73590 254 / 3e-82 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G77110 240 / 2e-77 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 206 / 4e-66 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 177 / 4e-55 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009054 [exp] 336 / 4e-114 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 318 / 2e-109 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018007 [exp] 305 / 9e-108 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 301 / 2e-106 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10001429 [exp] 287 / 2e-94 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 287 / 2e-94 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 214 / 3e-69 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10013422 [exp] 210 / 8e-68 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10012680 [exp] 189 / 3e-61 AT2G01420 245 / 8e-78 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047200 [exp] 304 / 1e-101 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 301 / 2e-100 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 301 / 4e-100 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 296 / 7e-99 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 297 / 1e-98 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 295 / 2e-98 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 287 / 1e-94 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 244 / 7e-79 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 242 / 3e-78 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 234 / 3e-76 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10009686 pacid=23140029 polypeptide=Lus10009686 locus=Lus10009686.g ID=Lus10009686.BGIv1.0 annot-version=v1.0 ATGCCGCCGACGAGCGTGATGACAAGGCTGATTCTGATCATGGTGTGGAGGAAGCTGATAAGGAACCCTAACACATACTCCAGCTTGATTGGTCTAATTT GGTCACTGGTTTCCTTCAGGTGGCACGTAACGATGCCTGCCATTATCGCAAAGTCCATCTCCATTCTGTCAGACGCTGGCCTCGGCATGGCCATGTTCAG TCTAGGGTTGTTCATGGCATTGCAGCCGAGGATAATAGCATGTGGGAAAAGAACAGCAACGTATGCAATGGGGGTTAGATTCTTTGTTGGACCAGCTGTC ATGGCTGCCGCCTCTATTGTTGTTGGCCTCAGGGGCACTCTCCTCCACATCGCCATTGTCCAGGCAGCACTTCCTCAGGGGATTGTTCCCTTTGTCTTCG CCAAGGAATACAATGTACACCCTGACATTCTCAGCACTGGGGTGATATTCGGGATGCTGATCGCCTTGCCCTTCACGCTAGTCTACTACATTTTGCTCGG ACTATGA
AA sequence Show only first row Show all	>Lus10009686 pacid=23140029 polypeptide=Lus10009686 locus=Lus10009686.g ID=Lus10009686.BGIv1.0 annot-version=v1.0 MPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVSFRWHVTMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGKRTATYAMGVRFFVGPAV MAAASIVVGLRGTLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPFTLVYYILLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10009686 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009685 [exp]	1.4	0.8163
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	15.0	0.7000
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	16.6	0.7719
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	17.1	0.7665
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	21.1	0.7429
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	25.3	0.7513
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	26.2	0.7354
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010407 [exp]	27.3	0.6554
AT4G17650			Polyketide cyclase / dehydrase...		Lus10042651 [exp]	28.7	0.7293
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	32.9	0.7287

Compare expression of checked genes

Lus10009686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.