Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 113 / 2e-28 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 92 / 4e-22 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 91 / 3e-21 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 89 / 4e-21 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 72 / 4e-14 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 59 / 1e-09 Transcriptional factor B3 family protein (.1) AT4G31680 57 / 5e-09 B3 REM8 Transcriptional factor B3 family protein (.1) AT1G49480 56 / 8e-09 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31690 57 / 1e-08 B3 REM9 Transcriptional factor B3 family protein (.1) AT5G66980 54 / 4e-08 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036045 [exp] 617 / 0 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 212 / 8e-67 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 177 / 2e-52 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009214 [exp] 165 / 2e-51 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1) Lus10025534 [exp] 150 / 2e-43 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 136 / 1e-39 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10022473 [exp] 137 / 9e-38 AT3G18990 78 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 111 / 1e-27 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10039303 [exp] 100 / 4e-23 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 141 / 1e-37 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 133 / 1e-35 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 103 / 7e-25 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 101 / 4e-24 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 91 / 3e-20 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 80 / 3e-17 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 82 / 4e-17 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 81 / 6e-17 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 78 / 1e-16 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 77 / 3e-15 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10009688 pacid=23160096 polypeptide=Lus10009688 locus=Lus10009688.g ID=Lus10009688.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTAGGCAAGCCTCAGCATGGAAATGAGAGCAACTTGAACCAGCAGGGAGCGATAACCCGTTTCTTCAAAATCATCCTCCACTCCACCATTC GTGACAAGAAGCTGATGATTCCTAGGAAGTTCATCAGCAGCTACGGAAGCAAAGTATGGAGATCTGCAACTTTGCAAGTTCCCGTTGGTGAAGACAAATG GGAGGTGGAGTTAGTAACGGATGACAAGAAAGGGGTTTGGTTCTGCAACGATGGATGGCAGAGATTTGCTGAGTTTCACTCTTTGAAGTATGGTCATTTC TTGTTTTTCGAGTACAAGGGTGACTCCACTTTCTCCATAGTCATATGCGACACCACTGCTACAGAGATTCAGTACCCAGTCACCACCAAAGCTAATGAAG CTGCTGCACAACCACCTAAGGTCAAGGAAGAAGATTATGTTTCCAAGGAGGAAGACAAATCTCCTATAGTGTCACCTACTGATGATGCTAAAGGAAAATG TCCTATGGTGGTGCCACCAACTGATGGTGTTGCTCAAGTTAGCCAAATGAAGAGGCAGAGGTGCAATTTAATCTGGGAATGGAATCCTTGTTCTGCAGTG AAGCATGAATTGAAAGTAGTTTCAAACCTGGGTGAGAATGATGCTTCAGCTGGAAAGCCAAAATCGTGCTGGAAGAGGGAACTCATCCCCGTAGCTAAAG AAGAAGAATTCACATCAGAGAATCCCTTCTTCACTATCAGAATCACTCCAACTTATGCCAAACAATACTTTGTGCATATACCTCTATGGTTTACGAGTCA GCAGAGAGCTTTCCAAGGTGAGAAACATGTGGAGCTGGAGGTTGGGGACAAGGCTTGGCCAGTGAATCTCCAATGCAGAAGGTATGTAAAGTTTGCTAGG GGCTGGAAGAGCTTTGTGGAAGATAACTCACTCAAAACTGGTGATGTTTGCACCTTCGAGCTCATCAAGGAATTGCCTAGCGTCTCCATGAAGGTCACCA TCACCAGAGATGTCTAA
AA sequence Show only first row Show all	>Lus10009688 pacid=23160096 polypeptide=Lus10009688 locus=Lus10009688.g ID=Lus10009688.BGIv1.0 annot-version=v1.0 MASLGKPQHGNESNLNQQGAITRFFKIILHSTIRDKKLMIPRKFISSYGSKVWRSATLQVPVGEDKWEVELVTDDKKGVWFCNDGWQRFAEFHSLKYGHF LFFEYKGDSTFSIVICDTTATEIQYPVTTKANEAAAQPPKVKEEDYVSKEEDKSPIVSPTDDAKGKCPMVVPPTDGVAQVSQMKRQRCNLIWEWNPCSAV KHELKVVSNLGENDASAGKPKSCWKRELIPVAKEEEFTSENPFFTIRITPTYAKQYFVHIPLWFTSQQRAFQGEKHVELEVGDKAWPVNLQCRRYVKFAR GWKSFVEDNSLKTGDVCTFELIKELPSVSMKVTITRDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10009688 [exp]	0	1
AT2G33420			Protein of unknown function (D...		Lus10023742 [exp]	7.7	0.8410
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10014989 [exp]	9.8	0.8456
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011731 [exp]	13.1	0.8685
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	23.1	0.8638
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Lus10023581 [exp]	24.9	0.8611
AT3G29300			unknown protein		Lus10023634 [exp]	26.5	0.8615
AT5G59790			Domain of unknown function (DU...		Lus10005442 [exp]	26.9	0.8633
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	37.6	0.8612
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	41.5	0.7584
AT3G29300			unknown protein		Lus10034904 [exp]	42.0	0.8598

Compare expression of checked genes

Lus10009688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.