Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19400 669 / 0 SMG7 Telomerase activating protein Est1 (.1.2.3) AT1G28260 177 / 2e-45 Telomerase activating protein Est1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036041 [exp] 630 / 0 AT5G19400 416 / 3e-136 Telomerase activating protein Est1 (.1.2.3) Lus10015430 [exp] 194 / 3e-51 AT1G28260 483 / 5e-158 Telomerase activating protein Est1 (.1.2) Lus10014007 [exp] 165 / 1e-41 AT1G28260 473 / 4e-154 Telomerase activating protein Est1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275400 [exp] 1108 / 0 AT5G19400 759 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.006G038500 [exp] 790 / 0 AT5G19400 620 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.011G053800 [exp] 232 / 4e-63 AT1G28260 560 / 0.0 Telomerase activating protein Est1 (.1.2) Potri.004G045300 [exp] 229 / 3e-62 AT1G28260 555 / 0.0 Telomerase activating protein Est1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10374 [flax] [poplar] EST1 Telomerase activating protein Est1
Representative CDS sequence Show only first row Show all	>Lus10009689 pacid=23160088 polypeptide=Lus10009689 locus=Lus10009689.g ID=Lus10009689.BGIv1.0 annot-version=v1.0 ATGTCTGCTCCTTCTTCCCGGGAGCGTGCACAACGTCTATATGAAAAGAACATTGAGCTGGAGAATAAACGTAGGAGGTCAGCTCAGGCACGTGTTCCGT CTGATCCGAATGCCTGGCAACAGATCCGTGAGAACTATGAGTCCATAATTCTCGAGGATCATGGTTTTTCTGAACAGCATAACATAGAATATGCTTTATG GCAATTACATTATAGGCGTATTGAGGAGTTGAGAGCTCACCTTAGTGGCGCTCTTAATTCTGCTGCCTCAAATTCATCTCAGGCTCCTGCTCGTCCTGAT CGCATCCAAAAGATACGATCACAATTCAAAACTTTTCTTTCTGAGGCAACTGGGTTTTATCATGATCTGATTCTGAAAATCAGAGCCAAATATGGGCTTC CTCTGGGGTTCTTCACAGATGGTTCCAATGATAGAGTTGTTATGGAGAAAGATGATAAGAAATCGGCTGACATCAAGAAAGGACTGATTTCCTGCCATCG TTGTTTGATATACTTGGGTGACCTTGTAAGGTACAAAGGTCTTTATGGGGAAGGGGACTCTAAGACACGAGAGTATGCAGCAGCTTCTAGTTACTACTTA CAGGCTGCTTCTCTTTGGCCATCAAGTGGGAATCCTCATCATCAGCTCGCTATTTTAGCCTCATATTCTGGCAATGAGCTGGTGGCAGTGTACAGGTATT TTAGGAGCTTGGCTGTGGATAATCCCTTTATGACAGCACGGGATAATTTGATTGTTGCTTTTGAGAAGAACCGGCAGAGTTACTCTCAGTTGGTTGGAGA TGTCAAAGCTTCTCCAGTTAAGGAGTCAGGAGTTCGGGGGAACGGCAGAGGAAGAGGAAAAGCGGAGGCCAAAGGCGCAACTAAAAACCTAAACCTTGGA GCTGATGGTGCCAAGGAGAAGGCAATCGATATTAAGGAGATCCGCAAATCATTTTGCACTCGATTTGTGCGTCTGAATGGCATTCTATTCACACGCACAA GCCTGGAGATGTTTGCTGAACTTCTTGCATCAGTCAGCTGTACTTTCTGTGAGCTTCTTTCTGCTGGCCCTGAAGAGACGCTAAATTTTGGATCAGATGC TGATGAAAATGGACATTTTATTGTTCACCTAATCTCAATTCTTGTATTCACTGTTCACAATGTTAAGAAAGAGGCTGAAGGCCAGACATATGCAGAGATT GTGCAGCGGGCTGTTGTTCTTCAACATGCTTTTACTTCAGCTTTTGAGCTAATGGGACATCTATTAGAGAGGTGCGGGCAGCTAAATGATCCTTCATCGA GTTACCTTTTGCCTGGAATTCTGGTTTTTGTGGAGTGGTTGGCCTGTTGTCCTGACGTTGCTGCAGTTGGTGATGCGGATGAGAAACAGGTTGCTGTAAG GGCAAACTTTTGGAGGTGCTGTATAGCTTTCATGAACAAGATCTTGACCTTCCGGTCCATGTCCCTTGGTGATAATGAAGATGATACATGTTTTAATAAC ATGAGTCGCTATGAAGAAGGGGAAACTGAGAACAGGCTCGCCTTATGGGAAGACTTTGAGCTCAGAGGATTTTTGCCACTGGTACCTGCTCAGATGATTT TGGACTTCTCTAGAAAACACTCCTTTGGAACTGAGGGTACTAAGGAAAGGATGGCACGCTTTAAACGAATTATTGGTGCAGGGAAAGCCTTAGCAAACAT TGTTAAGGTTGATGAGAAACCAGTTTCCTTTGATTCTAAAATGAAGAAATTTGTTATTGGTGCTGTCCGTGTTGCTAGTGGTGAAAGGTTCAATTCTGAT TTGGAACTTTCGAAAGCAAGTAACTTCGTTCATGAACTCAAGCCAGAGGAAGCTGCCACTTTTGGAGTCTTGAATACTAACCTCCAAACATATGTGGAAG GGGATGAGGACGATGAAGTTATCGTCTTCAAGCCTCTGGTTGCTGAGAAGCAAGATGATGGACTACATCTGAAGCATGGTCCTTATGAAAGTTTAAGACT CAGCTACCCTTCTTCTGCCGATCCTCAATTCTATGGTGGTTCTGTTTCTGGTGCTCTGGATGATCATCTCCTTCCGGCTGCTTTCAACGGACATCCAATA AAATCACCACCTCCTGGTATTGTGGGTACTCAACATCAACCGGCAATCCAACCTCCCTCTTCAAAATGGCTAATGGAAGAAGCTGCTTTGATTGCTAATA GTCTGAAAAGTGTCAGGTTTGTGGAAACTGCTCATGCAACTGACCATGGAATGAAGGAAGATTTTGGGGTTGCTCAGTTGGCTCCATCTTCTGTTTCAAG TCAACAGCCATCTGTCAGTATTAGTGCTACTGGTATGTTCTATAATCAAATGAAGGTTCCGGACACCTTGGTTCCATCCAAGGTCGACGCTGTGGCTTCT TCGGGGGTATTTGGTGAAAGCCTGGGATCACAGACAGCATCAGCTACTCCAGCTAGTTTTAGGAGGAGTCCTGTTAGCCGGCCTGTGAGACATCTTGGCC CTCCTCCAGGTTTTACTCCTGTTCCGCAGAAGCAGGTGACTGAACCTATTTCTGGCTCAGATATGATTAACGAGAATCCTCTAGCAGATGACTATAGCTG GTTGGATGGGTATCAGTTGCCATCGTCAACCAAAGCCTCTATGTTCAGTGCTTCAAGCAATATCTCCTCAAACTCAACTCTTCAATATGCCAGTAACAAC AACGGGTTTACAGGAACAGGAAGCTTTCCATTCCCTGGAAAACAATTGTCTACATCTCATGTGCAGTTAGAGAGGGAAAGAGAATGGTAG
AA sequence Show only first row Show all	>Lus10009689 pacid=23160088 polypeptide=Lus10009689 locus=Lus10009689.g ID=Lus10009689.BGIv1.0 annot-version=v1.0 MSAPSSRERAQRLYEKNIELENKRRRSAQARVPSDPNAWQQIRENYESIILEDHGFSEQHNIEYALWQLHYRRIEELRAHLSGALNSAASNSSQAPARPD RIQKIRSQFKTFLSEATGFYHDLILKIRAKYGLPLGFFTDGSNDRVVMEKDDKKSADIKKGLISCHRCLIYLGDLVRYKGLYGEGDSKTREYAAASSYYL QAASLWPSSGNPHHQLAILASYSGNELVAVYRYFRSLAVDNPFMTARDNLIVAFEKNRQSYSQLVGDVKASPVKESGVRGNGRGRGKAEAKGATKNLNLG ADGAKEKAIDIKEIRKSFCTRFVRLNGILFTRTSLEMFAELLASVSCTFCELLSAGPEETLNFGSDADENGHFIVHLISILVFTVHNVKKEAEGQTYAEI VQRAVVLQHAFTSAFELMGHLLERCGQLNDPSSSYLLPGILVFVEWLACCPDVAAVGDADEKQVAVRANFWRCCIAFMNKILTFRSMSLGDNEDDTCFNN MSRYEEGETENRLALWEDFELRGFLPLVPAQMILDFSRKHSFGTEGTKERMARFKRIIGAGKALANIVKVDEKPVSFDSKMKKFVIGAVRVASGERFNSD LELSKASNFVHELKPEEAATFGVLNTNLQTYVEGDEDDEVIVFKPLVAEKQDDGLHLKHGPYESLRLSYPSSADPQFYGGSVSGALDDHLLPAAFNGHPI KSPPPGIVGTQHQPAIQPPSSKWLMEEAALIANSLKSVRFVETAHATDHGMKEDFGVAQLAPSSVSSQQPSVSISATGMFYNQMKVPDTLVPSKVDAVAS SGVFGESLGSQTASATPASFRRSPVSRPVRHLGPPPGFTPVPQKQVTEPISGSDMINENPLADDYSWLDGYQLPSSTKASMFSASSNISSNSTLQYASNN NGFTGTGSFPFPGKQLSTSHVQLEREREW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	1.7	0.8362
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008957 [exp]	2.2	0.8175
AT3G56680			Single-stranded nucleic acid b...		Lus10034141 [exp]	4.6	0.7665
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	4.9	0.8270
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	5.7	0.8348
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	11.7	0.7950
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	12.2	0.8211
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	12.4	0.8004
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	12.4	0.7481
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	12.7	0.7716

Compare expression of checked genes

Lus10009689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.