Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26870 257 / 1e-81 NPC2 non-specific phospholipase C2 (.1) AT3G03530 147 / 1e-39 NPC4 non-specific phospholipase C4 (.1) AT3G03540 144 / 8e-39 NPC5 non-specific phospholipase C5 (.1) AT1G07230 142 / 5e-38 NPC1 non-specific phospholipase C1 (.1) AT3G03520 140 / 2e-37 NPC3 non-specific phospholipase C3 (.1) AT3G48610 133 / 1e-34 NPC6 non-specific phospholipase C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036038 [exp] 228 / 4e-73 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10040678 [exp] 147 / 1e-39 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10028492 [exp] 145 / 6e-39 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10005860 [exp] 145 / 7e-39 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10009153 [exp] 143 / 3e-38 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10001207 [exp] 123 / 1e-34 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1) Lus10035935 [exp] 125 / 5e-32 AT3G48610 773 / 0.0 non-specific phospholipase C6 (.1) Lus10025726 [exp] 125 / 9e-32 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10018228 [exp] 62 / 4e-12 AT1G07230 109 / 1e-29 non-specific phospholipase C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097900 [exp] 218 / 1e-66 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.013G073600 [exp] 213 / 1e-64 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1) Potri.001G250500 [exp] 213 / 2e-64 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 210 / 3e-63 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.009G069900 [exp] 192 / 1e-56 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G275500 [exp] 189 / 2e-55 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.012G099300 [exp] 131 / 4e-34 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10009690 pacid=23160089 polypeptide=Lus10009690 locus=Lus10009690.g ID=Lus10009690.BGIv1.0 annot-version=v1.0 ATGAAATATTTGCATAGGTGGTTTGCGTCAGTGCCGGCGTCGACGCAGCCGAACCGGCTGTACGTGCACTCGGGGACCTCAAACGGGGCCACGAGCAACA TTCCGGCGCTACTGGTGAAGGGATACCCGCAGAGGACCATATTCGAGAACATAGACGACGCCGGGCTGAAGTGGGGAATCTACTATCAGAATATTCCGGC GACTCTGTTCTACCGGAACTTGAGGAAGATCAAGTACGTGACGAATTTCCGGCCGTACGACTTGATGTTCAAGAGCCACGCCAAGCAAGGGAAAAATGGG GCGACGAGCAACATTCCGGCGTTACTGGTGAAGGGATACCCGCAGAGGACCATATTCGAGAACATAGACGACGCCGGGCTGAACTGGGGAATCTACTATC AGAATATTCCGGCGATCCTGTTCTACCGGAACTTGAGGAAGATCAAGTACGTGACGAATTTCCGGCCATACGACTTGATGTTCAAGAGCCACGCCAAGCA AGGGAAGCTCCCTAATTACGTGGTGGTGGAGCAGCGCTACACCGACATGAAAATCGCTCCGGCCAACGACGACTATCCTTCCCACGACGTCTACCATGGC CAGATGTTCGTCAAAGAGTTGTGCATGGGCCCGAGGGTCAACCAACCCTCAATTCCGGCCACCGTCAAGGAGATTTTCAACCTCCCATCTTTCCTTACTC AAAGAGACCGATGGGCTGGAACCTTTGAATCCATTCTCCAATCTAGAACTCAACCCAGAACTGATTGCCCAGGCAAGGTGAGGCTAACGAAGAAGCAAAC CTCAAGCAAATTCCAACAGGAAATGCTGCAGCTAGCAGCTGTTCTGAAGAGAGACAACCTTCTTTCCAGTTACCCCAATCAGATTGGGAAAAAAATGACT GTGAAGCAAGGCACTGTTTACATGGAAGATGCTGTTCAAGGCTTCTTTCAGGCCGGTGTTTTCGCTAAGAAGATAGGCGTCGATGACAAACAGATTGTAC AGATGAAGCCTTCCTTAACTACAAGACCAGCTCCCATCACCAACAATTACCCTTGA
AA sequence Show only first row Show all	>Lus10009690 pacid=23160089 polypeptide=Lus10009690 locus=Lus10009690.g ID=Lus10009690.BGIv1.0 annot-version=v1.0 MKYLHRWFASVPASTQPNRLYVHSGTSNGATSNIPALLVKGYPQRTIFENIDDAGLKWGIYYQNIPATLFYRNLRKIKYVTNFRPYDLMFKSHAKQGKNG ATSNIPALLVKGYPQRTIFENIDDAGLNWGIYYQNIPAILFYRNLRKIKYVTNFRPYDLMFKSHAKQGKLPNYVVVEQRYTDMKIAPANDDYPSHDVYHG QMFVKELCMGPRVNQPSIPATVKEIFNLPSFLTQRDRWAGTFESILQSRTQPRTDCPGKVRLTKKQTSSKFQQEMLQLAAVLKRDNLLSSYPNQIGKKMT VKQGTVYMEDAVQGFFQAGVFAKKIGVDDKQIVQMKPSLTTRPAPITNNYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	0	1
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	2.0	0.9154
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	3.7	0.8806
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10000032 [exp]	5.7	0.8559
AT4G14760			kinase interacting (KIP1-like)...		Lus10041192 [exp]	7.5	0.8788
AT1G13900			Purple acid phosphatases super...		Lus10036895 [exp]	10.6	0.8413
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	13.0	0.8654
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	14.0	0.8665
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	14.4	0.8580
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	15.9	0.8675
AT4G18490			unknown protein		Lus10021779 [exp]	16.1	0.8461

Compare expression of checked genes

Lus10009690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.