Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13500 501 / 4e-179 unknown protein AT2G25260 442 / 6e-156 unknown protein AT5G25265 426 / 1e-149 unknown protein AT3G01720 60 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036037 [exp] 659 / 0 AT5G13500 542 / 0.0 unknown protein Lus10041028 [exp] 446 / 2e-157 AT5G25265 618 / 0.0 unknown protein Lus10005347 [exp] 445 / 7e-157 AT5G25265 612 / 0.0 unknown protein Lus10022320 [exp] 56 / 3e-08 AT3G01720 1181 / 0.0 unknown protein Lus10014878 [exp] 56 / 4e-08 AT3G01720 1197 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070000 [exp] 580 / 0 AT5G13500 515 / 0.0 unknown protein Potri.001G275600 [exp] 576 / 0 AT5G13500 543 / 0.0 unknown protein Potri.001G028100 [exp] 520 / 0 AT5G13500 570 / 0.0 unknown protein Potri.003G195600 [exp] 496 / 4e-177 AT5G13500 532 / 0.0 unknown protein Potri.006G258800 [exp] 446 / 1e-157 AT5G25265 577 / 0.0 unknown protein Potri.018G023100 [exp] 446 / 2e-157 AT5G25265 583 / 0.0 unknown protein Potri.001G336400 [exp] 64 / 6e-11 AT3G01720 1215 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009691 pacid=23160085 polypeptide=Lus10009691 locus=Lus10009691.g ID=Lus10009691.BGIv1.0 annot-version=v1.0 ATGGGGAGGGTGTCACCTTTGCTACTGGTGCTTCTGGCATTTGGGTTTGCCTTTGCAACCTATAACTTATTAACGTTGATAATCAACTACAAGGCCACCA ACTCAGGAGATGGATCAGGTGGTTTTTCTGATCCCATTGCTACGATGCCTCAGAGGGTGAGGAAATTAGGGAACCCGAATTTGAAGTATCATGTGGCGCT TACCGCAACTGATGCTCCTTATAGTCAATGGCAATGCCGGATTATGTACTACTGGTATAGGAGGATGAAAGATGCCCCCGGATCAGACATGGGAAAGTTC ACGCGAGTTTTGCATTCCGGGAAGGCCGATAATCTTATGGACGAAATCCCTACTTTCATTGTTGATCCTCTGCCAGAGGGTTTGGATCGGGGGTATATCG TCTTAAACAGACCGTGGGCCTTCGTTCAGTGGCTGGAAAAGGCAACCATTGAGGAAGATTACATCCTAATGGCTGAGCCAGATCACCTATTTGTTAATCC TTTGCCTAACCTGTCACACGGAGGCAATCCAGCAGCATTTCCCTTCTTCTACATTAAACCAGCAGAACATGAGAACGTAGTCAGAAAGTTTTATCCCAAG GAGAAGGGTCCAGTAACGGATGTGGATCCTATTGGAAATTCTCCTGTGATCATTAAGAAGACCATCCTGGAGGAAATTTCACCAACTTGGGTCAATGTAT CATTGAGGATGAAAGATGATCCAGAGACGGATAAAGCATTTGGTTGGGTGCTAGAAATGTATGCTTATGCTGTAGCGTCAGCTTTACATGGTGTTCATCA TATACTTCAAAAAGACTTCATGATACAGCCACCATGGGATTTGGAAGTTGGGAAGACCTTTATTATTCATTATACTTATGGTTGCGACTACAACTTAAAG GGAGAATTAACTTATGGGAAGATTGGGGAATGGCGTTTCGACAAAAGATCCTATCTTAGTGGTCCTCCACCAAGGAATCTCTCATTGCCTCCACCAGGAG TTCCAGAAAGTGTGGTGAGATTGGTAAAAATGGTAAACGAAGCAACGGCGAATATAGCAGGTTGGGAGAGGTGA
AA sequence Show only first row Show all	>Lus10009691 pacid=23160085 polypeptide=Lus10009691 locus=Lus10009691.g ID=Lus10009691.BGIv1.0 annot-version=v1.0 MGRVSPLLLVLLAFGFAFATYNLLTLIINYKATNSGDGSGGFSDPIATMPQRVRKLGNPNLKYHVALTATDAPYSQWQCRIMYYWYRRMKDAPGSDMGKF TRVLHSGKADNLMDEIPTFIVDPLPEGLDRGYIVLNRPWAFVQWLEKATIEEDYILMAEPDHLFVNPLPNLSHGGNPAAFPFFYIKPAEHENVVRKFYPK EKGPVTDVDPIGNSPVIIKKTILEEISPTWVNVSLRMKDDPETDKAFGWVLEMYAYAVASALHGVHHILQKDFMIQPPWDLEVGKTFIIHYTYGCDYNLK GELTYGKIGEWRFDKRSYLSGPPPRNLSLPPPGVPESVVRLVKMVNEATANIAGWER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13500			unknown protein		Lus10009691 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10033776 [exp]	1.0	0.9405
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10007088 [exp]	3.5	0.9345
AT5G05330			HMG-box (high mobility group) ...		Lus10000418 [exp]	5.7	0.9321
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	6.0	0.9267
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	7.1	0.9370
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	8.9	0.9277
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10030953 [exp]	10.2	0.8983
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	21.0	0.9241
AT5G13500			unknown protein		Lus10036037 [exp]	24.7	0.9121
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	24.8	0.9166

Compare expression of checked genes

Lus10009691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.