Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12300 256 / 7e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G55530 188 / 3e-56 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 171 / 6e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036036 [exp] 381 / 5e-132 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003765 [exp] 192 / 2e-57 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 177 / 6e-53 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10032578 [exp] 171 / 4e-50 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10001346 [exp] 145 / 2e-41 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 91 / 1e-20 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070400 [exp] 311 / 8e-104 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 303 / 2e-100 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G088400 [exp] 185 / 6e-55 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 183 / 4e-54 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10009692 pacid=23160102 polypeptide=Lus10009692 locus=Lus10009692.g ID=Lus10009692.BGIv1.0 annot-version=v1.0 ATGGATCCTTACAACCCGACCCGAATGTACGACGGCGTCCTCGAAATCTACGTCCACCACGCCACAAACATCCACAACATCTGCATCTACGACAACCAAG ACGTGTACGCCAAATTCTCGCTGACCTACAACCCGGACGACGCCGTATCCACCCGGATCGTCAACGGCGGCGGGAGGAACCCGGAATTCAACGAGAAGAT CGCCGTCAAAGTCTCCCAAGTCCTCGACGCTGTCGTTAAATGCGAGATCTGGATGTTCAGCAGGGCTAGAAACTTGATGGAGGATCAGCTCCTCGGATTC GCTCTCGTCCCTGTTTCTCAGGTGATCGGGAAAGGGGAAGTCTCGCGAGATTATACACTCTCCTCCACCGATCTCTTCCATTCCCCTGCCGGAACCGTCA AATTGACCCTCTGTTTAACGCCGTTAACGTTATCTCTTCCTTCCTCCGCCACCGTTAATTCCTCGATTTCGTCCGAGGTAGTTCTGCTCGATCATAGGAA GATGGACCCCGTGGAGTATTCTAGAATCGAATTTCCCGATTTCAACGTCGCGCACCAGAATCAGCAAATGGTTTCCGAGTATTTCGATCGGAAACTCGGT TCCTTCCTCCATTTAGGAAATCTTCCTCCTCTCCCCACCGATTGCGGAGGTGGTTCGGTTTCTCCCGGCGGAAGCTTCAGGACATCATCCGGGTTCATTA GCTCCTCCACTACTACAAGCTTCACCGACGAGAAGAAGAGCTGGCGATCGTCACCCTCCGCCACCTCCCTGAACGTCTCTGTTTCCGGCGAAGGAAATCA GAGCTTGTCGTCTTCCTCCGGCGGGTGTCCGGACACTCCGACGTCAAGGAAAGGGAGCGTAATCAGAGACGAGAAAGACGGGAGGAAAGAAGAGGGAAAC GGGAACAAGTTGATCGACGGCGGGAAGTACGGCGAAATCTTCGCGGCGGGGACTCTACCGCCGGGGATTCCCGAGCAGGATTCTGAGGGGGGGGGGGTGG GCGAGCCGAAGGCGAGAGGGGTATGCAGCAGCAGATAG
AA sequence Show only first row Show all	>Lus10009692 pacid=23160102 polypeptide=Lus10009692 locus=Lus10009692.g ID=Lus10009692.BGIv1.0 annot-version=v1.0 MDPYNPTRMYDGVLEIYVHHATNIHNICIYDNQDVYAKFSLTYNPDDAVSTRIVNGGGRNPEFNEKIAVKVSQVLDAVVKCEIWMFSRARNLMEDQLLGF ALVPVSQVIGKGEVSRDYTLSSTDLFHSPAGTVKLTLCLTPLTLSLPSSATVNSSISSEVVLLDHRKMDPVEYSRIEFPDFNVAHQNQQMVSEYFDRKLG SFLHLGNLPPLPTDCGGGSVSPGGSFRTSSGFISSSTTTSFTDEKKSWRSSPSATSLNVSVSGEGNQSLSSSSGGCPDTPTSRKGSVIRDEKDGRKEEGN GNKLIDGGKYGEIFAAGTLPPGIPEQDSEGGGVGEPKARGVCSSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009692 [exp]	0	1
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	3.6	0.9485
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	6.9	0.9389
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	12.6	0.9367
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	15.2	0.9339
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	18.3	0.9189
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	18.5	0.9217
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10000636 [exp]	18.7	0.9259
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	18.7	0.9143
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	21.0	0.9031
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	21.6	0.9008

Compare expression of checked genes

Lus10009692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.