Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19430 216 / 6e-70 RING/U-box superfamily protein (.1.2) AT5G12310 207 / 1e-66 RING/U-box superfamily protein (.1) AT2G39100 49 / 1e-06 RING/U-box superfamily protein (.1) AT2G42030 45 / 2e-05 RING/U-box superfamily protein (.1) AT3G58030 45 / 3e-05 RING/U-box superfamily protein (.1.2.3.4) AT4G14220 44 / 7e-05 RHF1A RING-H2 group F1A (.1) AT3G60220 42 / 0.0003 ATL4 TOXICOS EN LEVADURA 4 (.1) AT1G19310 41 / 0.0005 RING/U-box superfamily protein (.1) AT1G35330 41 / 0.0006 RING/U-box superfamily protein (.1) AT5G38895 40 / 0.0007 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036034 [exp] 468 / 3e-169 AT5G19430 231 / 7e-76 RING/U-box superfamily protein (.1.2) Lus10034165 [exp] 45 / 2e-05 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10010513 [exp] 45 / 3e-05 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 45 / 3e-05 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10004162 [exp] 45 / 3e-05 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10013606 [exp] 44 / 6e-05 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 44 / 7e-05 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10021063 [exp] 44 / 8e-05 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 43 / 0.0002 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275900 [exp] 327 / 8e-114 AT5G19430 236 / 3e-78 RING/U-box superfamily protein (.1.2) Potri.009G070600 [exp] 292 / 3e-100 AT5G19430 224 / 2e-73 RING/U-box superfamily protein (.1.2) Potri.018G064400 [exp] 46 / 1e-05 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.010G092300 [exp] 44 / 7e-05 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.013G160000 [exp] 42 / 0.0002 AT5G01960 545 / 0.0 RING/U-box superfamily protein (.1) Potri.001G101700 [exp] 41 / 0.0003 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.003G129900 [exp] 41 / 0.0004 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 41 / 0.0004 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.013G011400 [exp] 41 / 0.0006 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.001G400600 [exp] 39 / 0.0007 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10009695 pacid=23160106 polypeptide=Lus10009695 locus=Lus10009695.g ID=Lus10009695.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCAGTCATCAGCATCAACGCCGAGATCTTGGTTGACGCTCTGGCCTGCGTTTCTGTTCACGATCAGGTTTTGGCTAATCATGGCGAAATTG AGAATAAGGCTGAATCCTCTGGAAAGGCCTCTGGTGGTCATGGTGGGATTTGTGCGATTTGCTTGGATAAGATTGTCCTGGAGGAGACTGCCCTTATTAA GGGTTGTGAGCATGCTTACTGTGTGACTTGCATCCTCCGGTGGGCAATGTACAGTAAGAATCAAAATTGCCCACAATGCAAACATCCATTTGAATCTCTA AATGTCCATCGCTCCCTCGATGGCAGCATCCATGATTACATGTTTGAGGAAAACGTGTGCCTTCTGCTCAGAGCCTCGTGGTTTAAACCGTTGGTAGTGG AAAGTCACAGCACTGTGTATGAAGATCCAGATGAGTTGTTTCCATATGATCAATATGAATATGGGTATGGGTACGAGGACGAAGAAGATGAACTGGATGA TGCATACTTCAGCAGTTCATCTGTCATTCGGATTGGCAACAGAAGGTGGGGGGACAATGGGTACGTTAGAGCAGGCCATCAAGAGGCAAGGCCTAGGCCG GTGAATAGGCCGGGCAACCATGATTCTGGAGCAGGCTCATCGTCGTCTCGTGAACCCAGGAAGGAGGCCGTAAAGGATAAGACAGGGCGGCGTGCGAAAA GAACACTGAAGCGTGAAGCTGCTGACAAGGCAGCTGCTGTGAAACATCAGCAGCATTTGGCAAGGCTGGGGCGCCAGTGA
AA sequence Show only first row Show all	>Lus10009695 pacid=23160106 polypeptide=Lus10009695 locus=Lus10009695.g ID=Lus10009695.BGIv1.0 annot-version=v1.0 MSSSVISINAEILVDALACVSVHDQVLANHGEIENKAESSGKASGGHGGICAICLDKIVLEETALIKGCEHAYCVTCILRWAMYSKNQNCPQCKHPFESL NVHRSLDGSIHDYMFEENVCLLLRASWFKPLVVESHSTVYEDPDELFPYDQYEYGYGYEDEEDELDDAYFSSSSVIRIGNRRWGDNGYVRAGHQEARPRP VNRPGNHDSGAGSSSSREPRKEAVKDKTGRRAKRTLKREAADKAAAVKHQQHLARLGRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19430			RING/U-box superfamily protein...		Lus10009695 [exp]	0	1
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	2.0	0.8803
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10009360 [exp]	2.2	0.8210
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	5.7	0.8381
AT2G17350			unknown protein		Lus10013847 [exp]	6.5	0.8254
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	13.4	0.8084
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10035937 [exp]	14.4	0.8103
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	18.7	0.8046
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	20.1	0.7695
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	20.9	0.8246
AT3G12760			unknown protein		Lus10009599 [exp]	22.8	0.7962

Compare expression of checked genes

Lus10009695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.