Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) AT4G35450 76 / 6e-17 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT4G27780 74 / 4e-16 ACBP2 acyl-CoA binding protein 2 (.1) AT2G17390 71 / 5e-15 AKR2B ankyrin repeat-containing 2B (.1) AT5G53470 70 / 9e-15 ACBP1 acyl-CoA binding protein 1 (.1) AT4G19150 66 / 1e-13 Ankyrin repeat family protein (.1.2) AT5G57740 65 / 8e-13 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G02620 63 / 4e-12 ATANK1, ANK1 ankyrin-like1 (.1) AT3G02850 61 / 3e-11 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G20350 61 / 3e-11 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036033 [exp] 300 / 3e-106 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10013859 [exp] 68 / 6e-14 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 68 / 9e-14 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001414 [exp] 65 / 4e-13 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10022382 [exp] 64 / 2e-12 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10009035 [exp] 64 / 2e-12 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10037694 [exp] 63 / 6e-12 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 62 / 9e-12 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10020272 [exp] 62 / 1e-11 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276100 [exp] 232 / 1e-79 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.009G070700 [exp] 232 / 2e-79 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.010G185200 [exp] 74 / 8e-16 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.003G103400 [exp] 72 / 2e-15 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.013G062000 [exp] 69 / 2e-14 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.004G210100 [exp] 68 / 7e-14 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 68 / 7e-14 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.010G161300 [exp] 65 / 3e-13 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G130500 [exp] 64 / 1e-12 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.002G213200 [exp] 64 / 2e-12 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10009696 pacid=23160109 polypeptide=Lus10009696 locus=Lus10009696.g ID=Lus10009696.BGIv1.0 annot-version=v1.0 ATGACGGGAGAGTTGAATCAGCTGCAGCAACAACAGTCTGGCGCCAGAATGTTGCAGATTACGGAGGAGACCGTCGACGCCCTCCTTGATGCCGCCAGGT ACGATGATATTGATGACATCAAGAGCTTAGTGTCTTCTGGAGTTCCTCTCAATTCTAAGGACTCATTTGGAAGGACAGCACTTCACATGGCTTCTGCTAA TGGACATCTTAATATTGTCCAGTATCTGATTGATCATGGAGTGGATCTGAACGCTTCCAATGAGGAGAAGAATACGGCTCTTCACTGGGCTTGCCTGAAT GGTCACAGTGAGGTGGTTAAGAAATTGATCCTAGCCGGAGCTAGTTTATGCACTCTCAACAGCCATGAGAGAACTCCTATGGACGAAGCTGTTACTCGGG GCAAAACGGATGTTATCGATGCAATTAACGCAGCTGTAGCACAACTGGAACTTGCTGGTGTCACAGTTTCCTAA
AA sequence Show only first row Show all	>Lus10009696 pacid=23160109 polypeptide=Lus10009696 locus=Lus10009696.g ID=Lus10009696.BGIv1.0 annot-version=v1.0 MTGELNQLQQQQSGARMLQITEETVDALLDAARYDDIDDIKSLVSSGVPLNSKDSFGRTALHMASANGHLNIVQYLIDHGVDLNASNEEKNTALHWACLN GHSEVVKKLILAGASLCTLNSHERTPMDEAVTRGKTDVIDAINAAVAQLELAGVTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	0	1
AT4G17010			unknown protein		Lus10001160 [exp]	1.0	0.9296
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	2.6	0.8930
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10031406 [exp]	3.3	0.8784
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	3.7	0.9166
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10013779 [exp]	5.5	0.8968
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029589 [exp]	6.1	0.8589
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	6.9	0.8976
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	7.1	0.9029
AT5G59210			myosin heavy chain-related (.1...		Lus10040740 [exp]	7.7	0.8619
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	8.8	0.8748

Compare expression of checked genes

Lus10009696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.