Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19790 98 / 6e-25 SRS7 SHI-related sequence 7 (.1.2) AT5G12330 96 / 7e-25 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT1G75520 97 / 1e-24 SRS5 SHI-related sequence 5 (.1) AT3G51060 95 / 8e-24 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT4G36260 93 / 3e-23 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT5G66350 92 / 6e-23 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT5G33210 85 / 5e-22 SRS8 SHI-related sequence 8 (.1.2) AT2G18120 81 / 4e-19 SRS4 SHI-related sequence 4 (.1) AT2G21400 76 / 5e-18 SRS3 SHI-related sequence3 (.1) AT3G54430 73 / 1e-16 SRS6 SHI-related sequence 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036032 [exp] 201 / 1e-65 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10041802 [exp] 93 / 1e-23 AT5G66350 150 / 4e-44 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10028352 [exp] 94 / 2e-23 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10024305 [exp] 92 / 1e-22 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10003416 [exp] 90 / 7e-22 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10028794 [exp] 45 / 4e-06 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10017492 [exp] 44 / 7e-06 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276200 [exp] 106 / 4e-28 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.009G070800 [exp] 105 / 1e-27 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.002G028500 [exp] 95 / 7e-24 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.005G118200 [exp] 93 / 4e-23 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.007G017500 [exp] 91 / 3e-22 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.005G234200 [exp] 90 / 3e-22 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.003G196100 [exp] 86 / 9e-21 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.009G121600 [exp] 83 / 2e-20 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.004G160600 [exp] 82 / 8e-20 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.001G027700 [exp] 81 / 5e-19 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10009697 pacid=23160100 polypeptide=Lus10009697 locus=Lus10009697.g ID=Lus10009697.BGIv1.0 annot-version=v1.0 ATGGACGGAGGAGACCACGATCATCACCACAATCTGTTTCAACGGAAGATTGGTAGCAGCAACAGTAGCGGGATTCAATTCTGGCAGCACTATAACAACA GCATCAAGAAGACTAATCCTCCCTCTTCTTCAATTCTCGATCCAAACAATAATGCTAACAACAATAACAACAACAATAATAATAATCCGCCGCAAAGTGG AGGAGTGGTGATGAATTCGATGATGGCGACGACGAGCTCTTCATCGACGGCGACATGTCAGGACTGCGGGAACCAGGCGAAGAAAGACTGTCCGCATAGG CGGTGTAGGACTTGCTGCAAGAGCCGCGGATTCGACTGTGCAACTCACGTGAAGAGTACGTGGGTCCCTTCCGCTAGGAGGAGGGAGCGCCAGCTCATGA CGGCGCCTTCTAGAAGCTACGACACCACCTCTAGCCATCATCATCAAGATGCGGGGTTTAGGTAG
AA sequence Show only first row Show all	>Lus10009697 pacid=23160100 polypeptide=Lus10009697 locus=Lus10009697.g ID=Lus10009697.BGIv1.0 annot-version=v1.0 MDGGDHDHHHNLFQRKIGSSNSSGIQFWQHYNNSIKKTNPPSSSILDPNNNANNNNNNNNNNPPQSGGVVMNSMMATTSSSSTATCQDCGNQAKKDCPHR RCRTCCKSRGFDCATHVKSTWVPSARRRERQLMTAPSRSYDTTSSHHHQDAGFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10009697 [exp]	0	1
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	7.0	0.8967
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	7.7	0.9451
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	9.9	0.9446
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10015028 [exp]	12.5	0.9435
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	13.7	0.9334
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	15.4	0.8923
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	15.8	0.9419
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	16.6	0.9420
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	19.4	0.9360
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	23.2	0.8944

Compare expression of checked genes

Lus10009697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.