Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12340 98 / 4e-25 unknown protein AT1G28190 46 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036031 [exp] 178 / 4e-56 AT5G12340 192 / 1e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276400 [exp] 137 / 1e-40 AT5G12340 191 / 2e-61 unknown protein Potri.009G071100 [exp] 127 / 1e-36 AT5G12340 187 / 4e-60 unknown protein Potri.001G070700 [exp] 59 / 2e-10 AT1G28190 150 / 2e-44 unknown protein Potri.003G160000 [exp] 57 / 1e-09 AT1G28190 168 / 4e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009698 pacid=23160103 polypeptide=Lus10009698 locus=Lus10009698.g ID=Lus10009698.BGIv1.0 annot-version=v1.0 ATGATTTATTTAATTAACAAATACGAGAAACCAGAGTTTAAATGTGATCTCACACGTCAGCAACGCAAAGTATACACTGAGAGGAGCTTTTTGTCCATAA AAATCAAGGCCGCCAACGCTGCCCACCGACTGGGCCCCACGGAGCACCTTTTCCTCACGAGACGACATCTACTTCATGGGGAACGCAATCTCCCCTTATC GTTGCTTCCGCCCGTGCTCGCCAAAGTTGGTCAAACCCTATCTGCTTCCTTCCTCGCCTCCTTGGCCACAACAAGAAGTAGTAGTGCCAGTTCGAATGCT AAGCCGGTGATCAACTTCGGGGGATGCCAGCCGTTCGAGTACCTTAAGGGTTCGAACGGTAGGGTTTTGATTAAAGTGGCGCCGGAGTTTTTGATCAAGC TTGTGAAAAGTGGGAGATCGGAAGAAGAAGAAGAAGAAGAAGGGAATGGCAATGATGGTAACAATGATGGTGGTGAGGGGATATTCCTTTGTAGCACTCC GGAGCTAAAGAAGCATTACGAGCAGCTGGTTGGGTGTAGAGAGCAGACGTGGTCGCCGAAGCTGGAGACGATTTCGGAGTATAGAGTTCGCTACTCTCCC TGCCGGTTTATCGGGTTGGAGTGGAAACAGAAAGAAGAACAATGA
AA sequence Show only first row Show all	>Lus10009698 pacid=23160103 polypeptide=Lus10009698 locus=Lus10009698.g ID=Lus10009698.BGIv1.0 annot-version=v1.0 MIYLINKYEKPEFKCDLTRQQRKVYTERSFLSIKIKAANAAHRLGPTEHLFLTRRHLLHGERNLPLSLLPPVLAKVGQTLSASFLASLATTRSSSASSNA KPVINFGGCQPFEYLKGSNGRVLIKVAPEFLIKLVKSGRSEEEEEEEGNGNDGNNDGGEGIFLCSTPELKKHYEQLVGCREQTWSPKLETISEYRVRYSP CRFIGLEWKQKEEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12340			unknown protein		Lus10009698 [exp]	0	1
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040858 [exp]	4.2	0.8726
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	9.7	0.8800
AT3G02990	HSF	ATHSFA1E	heat shock transcription facto...		Lus10005925 [exp]	18.7	0.8597
AT5G53110			RING/U-box superfamily protein...		Lus10012628 [exp]	20.9	0.8548
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10009328 [exp]	23.7	0.8688
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	24.2	0.8740
					Lus10021752 [exp]	24.7	0.8536
AT4G30230			unknown protein		Lus10041416 [exp]	29.4	0.8704
AT5G64120			Peroxidase superfamily protein...		Lus10007050 [exp]	37.7	0.8593
AT2G15780			Cupredoxin superfamily protein...		Lus10009079 [exp]	40.2	0.8056

Compare expression of checked genes

Lus10009698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.