Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19420 1425 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 1386 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 853 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 784 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 770 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 660 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT4G14368 652 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 651 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 492 / 4e-157 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 188 / 1e-51 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036030 [exp] 1827 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 1127 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 1065 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10016335 [exp] 915 / 0 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 911 / 0 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10018904 [exp] 907 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 822 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 797 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 773 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G071800 [exp] 1556 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 1459 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 1272 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 1270 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 1262 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 847 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 795 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 755 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 647 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 640 / 0 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10009701 pacid=23160087 polypeptide=Lus10009701 locus=Lus10009701.g ID=Lus10009701.BGIv1.0 annot-version=v1.0 ATGTCGCGTACTGATAGGATGGTTGCGGATCTCAGTAGACCGGGTCCTGCAGAAAGGGACATTGAGCAGGCCATCACTGCTCTGAAGAAAGGCGCTTATT TGCTGAAGTATGGAAGAAGGGGAAAGCCAAAATTTTGTCCCTTTCGTCTTTCCAACCCAATCTTTCAGAGGCATCCACGTCCTGAGAAGGAATACCAATC ATTTTCTCTTATATATAATGACAGGTCTCTGGATTTGATTTGCAAAGATAAAGATGAAGCTGAGGTGTGGTTTAGTGGGTTGAAAGCATTAATCTCACGC AGCCATAACCGGAAAGGTAGATCAGAAACAAGAAGTGATGGAAGTCCATCTGAGCTAAGCAGTCCTAGGACATATACTCGTAGAAGTTCTCCCTTGAATT ATCCATATGGAAGTAATGAGAGTTTCCAAAAGGATGGAGATAACCTTCGTCTTCATAGTCCATATGGAAGTCCGCCGAAGAATGGACTAGAGAAGTCTTT CTCCGATGTGATCTTTTATGCTGTTCAGCCAAAAGGGGTGTTTCCGTCAGATTCAGCTAGTGGGTCGGTTCATTCATTATCATCTGGGGGCTCAGATAGT ATGCATGGTCATACAAAGGGAATGGGAATGGATGCTTTTAGAGTTAGCCTATCAAGTGCTGTCAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTG ATGCCCTAGGGGATGTTTTCATTTGGGGTGAAGGAACAGGAGAAGGTGTCCTAGGTGGAGGAGGTCATAAAGTTGAGAACTGTATCGGAGTAAAAATGGA TTCATTGTTGCCTAAACCTTTAGAATCTACAGTTGTACTTGATGTCCAGAACATTGCTTGTGGCAGCCGTCATGCAGCATTAGTGACCAAGCAAGGTGAG ATTTTCTCCTGGGGGGAGGAATCAGGAGGCCGACTTGGGCATGGTGTTGATGCCGATGTCATGCATCCGAAACTCTTAGATGCTCTTAGCAATGCAAACA TTGAACTGGTGGCTTGTGGTGAATATCATAGTTGTGCTGTAACACTTTCTGGTGATTTGTATACATGGGGTGATGGAACATACAATTTTGGCCTTCTTGG ACATGGAAATGTCGTTAGTCACTGGGTTCCAAAGAGAGTTAGTGGACCCTTAGAAGGCATACATGTATCGTCAATCTCCTGTGGACCATGGCATACAGCA ATCGTAACTTCTTCTGGGCAATTATTTACATTTGGTGATGGAACGTTTGGAGTTCTAGGTCATGGAGACCGGAAAAGTGTTTCGTTGCCGAGGGAAATAG AATCCCTCAAAGGGCTCAGAACTGTACGAGCAGCATGTGGTGTTTGGCATACGGCTGCAGTTGTAGAAGTCATGGTCGGTAATTCGAGTTCTAGCAATTG TTCTTCAGGTAAGTTGTTTACTTGGGGAGATGGAGATAAGGGAAGACTTGGGCATGGTGACAAGGACACCAAACTTGTTCCTACTTGTGTTGCTGCTCTG GTTGACCCCAACTTTTGTCAAGTTGCATGCGGGCATAGTCTGACTGTTGCACTTACAACCTCGGGTCATGTCTACACTATGGGTAGTCCTGTTTACGGTC AACTAGGGAACCCAGAAGCTGAAGGGAAGCTCCCTACCCGTGTGGTAGGGAAACTCTCAAAGAATTTTGTTGAGGAGATTGCTTGTGGTGCTTATCATAT TGCAGTTTTGACTTCCAAAACTGAAGTTTATACTTGGGGCAAGGGAGCCAACGGTAGATTGGGTCATGGAGATATGGATGACAGAAATTCTCCAACGCTG GTGGAAGCCTTAAAAGACAAGCAAGTCAAGAGCATTGCGTGTGGTGCTAATTTTACTGCAGCTATTTGCCTTCATAAATGGGTGTCAGGTATTGACCAGT CTATGTGTTCTGGTTGTCGGCTTCCATTTAACTTCAAGAGAAAACGGCACAATTGCTATAATTGTGGACTAGTTTTCTGCCATTCATGCAGCAGCAAGAA ATCTCTTAAAGCTTCTATGGCACCAAATCCACACAAACCTTATCGTGTATGTGATAATTGCCTTAACAAAATTAGGAAAGCCATGGATACTGATGCATCA TCTCATTCCTCAATGAGTAGAAGAGGTAGTATAAATCATGGGTCTAATGAGTTTACTGAGAAAGATGAGAAGTTGGATTCAAGGTCTCGAGCCCAGCTAG GTAGGTTTTTATCAATGGAGTCTTTGAAGCAAGCAGACGCTCAAACCAAGAGAAACAAGAAATTTGAATTCAACAGTAGCCGTGTATCGCCGATACAAAA TGGCGGTTCTCAGTGGGGAGGACTTAACATTTCTAAATCTTTAAATCCAATGTTCAGTTCATCCAAGAAATTCTTCTCTGCCTCAGTTCCTGGTTCAAGA ATTGTTTCTCGAGCAACATCACCCATCTCCAGACGACCTAGTCCACCTCGCTCAACGACACCGACACCAACCTTGGGTGGTCTCACTTCACCCAAAATAG TCGTTGATGATGTTAAAAAAGCAAATGAAAGTCTCAGCCAGGAGGTTATTAAATTAAGAGCACAGGTAGAAAATTTAACTCGCAAAGCTCAGCTTCAAGA AACTGAGCTAGAACGAACAACCAAACAGCTGAAGGAAGCGATAGCAATTGCAGGAGAGGAAACTGCAAAATGCAAAGCATCAAAGGAAGTAATCAAGTCA CTCACTGCTCAACTGCAAGACATGGCGGAAAGACTACCCGTGGGAGCAGCAAAGAATTTGAAGTCAACTTCGTTTACTGCTTTTGGATACAGTCCTACGA ATGAGACGCCAACCACCGATGCTGCTTCCGTGGAGCACTCGAATGGCCAATTTCCACCCCAAGAAACGGACACACATGGGCTAAATAATAACCAAATAAT ACCCAGAGGTGGCAGCACAACGAGTAGCTATAGTTCTGGTTACACCAATAAACAAGTAGACCCAACACTGAGAAACGGCGGAAGAACAAAAGATGGCGAT GGAGCCGAATGGGTTGAACAAGATGAGGCTGGTGTTTATATTACACTAACCTCTTTGCCAGGCGGAGGCAAGGATCTCAAGCGTGTGCGCTTCAGTCGGA AAAGATTCACAGAAAAACAGGCAGAGCAGTGGTGGGCTGAGAACAGAGCAAGAGTATATGAACAGTACAATGTGAAAATGGTTGATAAGTCGAGTGTTAG TGTTGGTGGCGCAGATTTGCCACGCTAG
AA sequence Show only first row Show all	>Lus10009701 pacid=23160087 polypeptide=Lus10009701 locus=Lus10009701.g ID=Lus10009701.BGIv1.0 annot-version=v1.0 MSRTDRMVADLSRPGPAERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNPIFQRHPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISR SHNRKGRSETRSDGSPSELSSPRTYTRRSSPLNYPYGSNESFQKDGDNLRLHSPYGSPPKNGLEKSFSDVIFYAVQPKGVFPSDSASGSVHSLSSGGSDS MHGHTKGMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGEGVLGGGGHKVENCIGVKMDSLLPKPLESTVVLDVQNIACGSRHAALVTKQGE IFSWGEESGGRLGHGVDADVMHPKLLDALSNANIELVACGEYHSCAVTLSGDLYTWGDGTYNFGLLGHGNVVSHWVPKRVSGPLEGIHVSSISCGPWHTA IVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKDTKLVPTCVAAL VDPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPEAEGKLPTRVVGKLSKNFVEEIACGAYHIAVLTSKTEVYTWGKGANGRLGHGDMDDRNSPTL VEALKDKQVKSIACGANFTAAICLHKWVSGIDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPHKPYRVCDNCLNKIRKAMDTDAS SHSSMSRRGSINHGSNEFTEKDEKLDSRSRAQLGRFLSMESLKQADAQTKRNKKFEFNSSRVSPIQNGGSQWGGLNISKSLNPMFSSSKKFFSASVPGSR IVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDVKKANESLSQEVIKLRAQVENLTRKAQLQETELERTTKQLKEAIAIAGEETAKCKASKEVIKS LTAQLQDMAERLPVGAAKNLKSTSFTAFGYSPTNETPTTDAASVEHSNGQFPPQETDTHGLNNNQIIPRGGSTTSSYSSGYTNKQVDPTLRNGGRTKDGD GAEWVEQDEAGVYITLTSLPGGGKDLKRVRFSRKRFTEKQAEQWWAENRARVYEQYNVKMVDKSSVSVGGADLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	0	1
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	3.7	0.8817
AT2G24530			unknown protein		Lus10042444 [exp]	4.5	0.8317
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	4.6	0.8660
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	7.7	0.8605
AT3G45830			unknown protein		Lus10018121 [exp]	8.2	0.8683
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	8.9	0.8179
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	10.6	0.8638
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	11.7	0.8473
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	13.0	0.8266
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	14.7	0.8091

Compare expression of checked genes

Lus10009701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.