Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27110 397 / 4e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 318 / 1e-99 MEF22 mitochondrial editing factor 22 (.1) AT2G13600 306 / 5e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 291 / 1e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G40720 285 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 283 / 1e-84 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31430 274 / 4e-84 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G01580 276 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 275 / 1e-82 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G14730 272 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036029 [exp] 573 / 0 AT5G27110 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023710 [exp] 309 / 9e-97 AT4G18750 385 / 3e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004253 [exp] 312 / 2e-95 AT3G49170 832 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 298 / 5e-92 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 296 / 1e-91 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 292 / 2e-90 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 289 / 2e-89 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039703 [exp] 289 / 3e-89 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 288 / 7e-89 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244500 [exp] 306 / 6e-95 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 304 / 1e-94 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G152000 [exp] 303 / 3e-93 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G105700 [exp] 297 / 1e-91 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 297 / 1e-90 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G128900 [exp] 293 / 6e-90 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 296 / 2e-89 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 295 / 2e-89 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G074700 [exp] 292 / 2e-89 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 292 / 3e-89 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009702 pacid=23160097 polypeptide=Lus10009702 locus=Lus10009702.g ID=Lus10009702.BGIv1.0 annot-version=v1.0 ATGACCATCCAGAAGTTAATCGTTCTTTTGAAAAATTGCAATGGTTCCAAATCTCTCCTACAAGCCAAACTCATCCACCAAAAGATCCTGACCTTAGGCC TGCAGAACAACATTGTTCTGTGTAAAAGCCTGATCAATCTCTATTCTTCTTGCTCTTGTTATGGCTTTGCCGGACTTGTTTTCCGAAGTATTGAAAACCC ATTGGACATCTCCTTGTGGAATTGCCTCATGGCTGCGTATACAAAAAACCACATGTACTCTGAAGCCATAGGGCTCTTCAAAACTTTACTGCACTGCCCG TGTGTGAAGCCCGATTGTTTCACTTACCCCAATGTGTTGAAGGCCTGCGGTGCATTGAATTGGATTCTTCCCGGGAGAGTGATGCATGGCCAATTTGTGA AATCTGGGTATGTATTTGATGTTGTGATTGCGAGTTCTCTTGTTAGGTTGTATGCTAAATGTGGTTTCTTCAAGTGTGCTGTTCAGCTGTTTGATGAAAT GCCTGACAGAGATGTAGCGAGTTGGAACACCGTCATATCTTGTTATTATCAAGATGGTAAAGCTGAGAGGGCGTTGGATTTATTTGAGAGGATGAGGGGA CTTGCAATTGATCCGAACTATGTTACGTTAACCATTGTTATTTCTGCCTGTGCTAGACTTTTAGATTTGGATATGGGGAAGCGAATTCATATGGAATTGA TGAGGACTGGGTTTGTGTTTGATGATTTGGTGAGTGCTGCTCTGGTTGAATTGTATGGAAAATGTGGTTGCTTGGAGATGGCCAAAACTGTTTTTCAGCA GATGCCCAAGAAGACCGTAGTTGCTTGGAATTCCTTGATTTCAGCACATGGCTTAACAGGTGACTGTAATCAATGTATTGAACTTCTCAGGATGATGATT GAGGAAGGTGTTAGACCGACTCTGTCCACTTTGAGTACCATCTTGATGGCCTGTTCAAGATCATCACAACTTCAACTTGGATCATTTGTCCATGGATACA TATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGCAGGCGTGAAGCCAGATGCTATGACATTTTCGAGCACTTTATCAGCTTGTGC GCAGTTAGCAGCCTTGGAACAGGGCAAACATATCCATGGTTCCATTTTTGAGAATGGACTGGAAAACAATGAAGTAGTTATGGGGGCTCTGATGGACATG TATTCTAAATGTGGCGAAATAAATGAAGCTTTCAACATATTTCGCAAGTTGCCAGCCAGGGACCTGATATCTTGGACTTCCATGATTACTGCGTATGGTT CACACGGGCAAGCTAGAGAGGCTCTAAAGCTCTTCAATGAAATGGAGTTGGCTAATGTGAAGCCAGATGGACCCAAGTATGAACATTACTCGTGCTTGAT TGATCTTCTTGGGCGGGTTGGGAAGGTGCATGAAGCTTATCATGTTCTCCAAACAAATCCAGAAATTAGAGATGATGTTGAACTGTTAAGTTCAATATTC TCAGCCTGTTGCTTGCACAAGGAAGTTGAACTGAAAGAAGAAATCACAAAGCTCCTTATTGAAAAGGATCCTGATGATCCCTCGACGTATATTTCATTGT CCAACATGTATGCCTCTTCAAGCAAATGGAACGACATGCGAAACATGAGACTAAGGATGAAGGAGTTGAGCATGAGAAAGAATCCTGGGTGTAGCTGGAT TGACATTGATAACCGTATCACGATGTTCTTCGTGGAAGATATGGCTCATTGCAAATCAGAAATTGTGCGTGAATGTCTCAGACATCTTTACTGTCATATG GAAAAGGATGAAAAGCTACAATATTCAGAGACCATACTGAACTAG
AA sequence Show only first row Show all	>Lus10009702 pacid=23160097 polypeptide=Lus10009702 locus=Lus10009702.g ID=Lus10009702.BGIv1.0 annot-version=v1.0 MTIQKLIVLLKNCNGSKSLLQAKLIHQKILTLGLQNNIVLCKSLINLYSSCSCYGFAGLVFRSIENPLDISLWNCLMAAYTKNHMYSEAIGLFKTLLHCP CVKPDCFTYPNVLKACGALNWILPGRVMHGQFVKSGYVFDVVIASSLVRLYAKCGFFKCAVQLFDEMPDRDVASWNTVISCYYQDGKAERALDLFERMRG LAIDPNYVTLTIVISACARLLDLDMGKRIHMELMRTGFVFDDLVSAALVELYGKCGCLEMAKTVFQQMPKKTVVAWNSLISAHGLTGDCNQCIELLRMMI EEGVRPTLSTLSTILMACSRSSQLQLGSFVHGYIXXXXXXXXXXXXXXVAGVKPDAMTFSSTLSACAQLAALEQGKHIHGSIFENGLENNEVVMGALMDM YSKCGEINEAFNIFRKLPARDLISWTSMITAYGSHGQAREALKLFNEMELANVKPDGPKYEHYSCLIDLLGRVGKVHEAYHVLQTNPEIRDDVELLSSIF SACCLHKEVELKEEITKLLIEKDPDDPSTYISLSNMYASSSKWNDMRNMRLRMKELSMRKNPGCSWIDIDNRITMFFVEDMAHCKSEIVRECLRHLYCHM EKDEKLQYSETILN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10009702 [exp]	0	1
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	4.2	0.7969
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	13.2	0.7864
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10033982 [exp]	13.3	0.8159
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	16.2	0.8034
AT5G02050			Mitochondrial glycoprotein fam...		Lus10012653 [exp]	17.0	0.7243
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10041717 [exp]	19.4	0.7679
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	24.3	0.8112
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	30.8	0.8024
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	34.9	0.7813
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	35.1	0.7975

Compare expression of checked genes

Lus10009702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.