Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40380 314 / 4e-98 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70530 310 / 2e-96 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G56120 253 / 2e-72 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 251 / 7e-72 Leucine-rich repeat transmembrane protein kinase (.1) AT1G70740 238 / 1e-71 Protein kinase superfamily protein (.1.2) AT1G70520 242 / 5e-71 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G56130 248 / 1e-70 Leucine-rich repeat transmembrane protein kinase (.1) AT1G16670 233 / 3e-70 Protein kinase superfamily protein (.1) AT1G56145 246 / 4e-70 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G09010 229 / 1e-68 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036028 [exp] 376 / 7e-128 AT5G40380 65 / 4e-12 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10010960 [exp] 357 / 3e-115 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10010927 [exp] 265 / 1e-80 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020688 [exp] 255 / 3e-78 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10003711 [exp] 249 / 1e-76 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10031401 [exp] 253 / 2e-76 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1) Lus10001595 [exp] 250 / 2e-76 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031199 [exp] 254 / 9e-73 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10011193 [exp] 238 / 4e-72 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276600 [exp] 426 / 2e-141 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.017G141400 [exp] 396 / 3e-129 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 392 / 4e-127 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G348000 [exp] 298 / 1e-91 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.018G132900 [exp] 277 / 1e-86 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G071300 [exp] 265 / 6e-82 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G109700 [exp] 261 / 1e-80 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G132300 [exp] 258 / 7e-80 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2) Potri.004G040200 [exp] 249 / 2e-76 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 257 / 4e-74 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10009703 pacid=23160083 polypeptide=Lus10009703 locus=Lus10009703.g ID=Lus10009703.BGIv1.0 annot-version=v1.0 ATGAACGACGAAGTAACAACATGGCCCACAACCAGAAGCATCCTGCTTTTCTACATATATCTGAATTGGGGATTACTGATCAAGACAGCAGCTTCTGACC CAGGAATCAATCTGCTGAGTGCCGGATGTAGCCAATATGAAGTTGGCGACTTGCGTATTTCTAGAGACAACCTGAACTCGAGCTTCTCTGAGCTCAGAGC TAAGTTGAATGGTAGTAGCAGCGAGTATTTCGCAACAGCACATCGAACTTCTGGTCAGGAACCCGTTTACACGATGGGTCAGTGCAGGAATTACATGTCC AAACCCGATTGCCTTGCTTGCTTTGACGACGCTGTTGCCAGAATCCTCAATTGCTCTTCTGCCAATGGTGCCCGCGTGATCTTGGATGGTTGCTTCCTCA GGTATGAGAGGAACCCTTTCTATGACCAGAGCACTCAGGATGGCCACAGTGCGGTTTGTGGGAACCAGACCATATCCACGCAGGATAAAAATTATGGCAC AGCTCTGGAAGATCTTCTGTCAAATCTTGTGATTGCCACACCCAAGCTGAATGGATTTTATGCAGCAAGCAAAAAGGAAGTGGTAGCTGCTGGTGGTGGT AATAATGCCACAGTTTATGCTGTGGCACAGTGTGTTAAAACTGTCGGCCAGATTGGTTGCCAGGATTGCTTGAATCTTGCATATGCTGATTTGCAGAGAT GCTTTTCCAACACTTATGCTAGTTCAATCAATGTGGGATGTTTCGAGAGGTTCTCCAATACAACTTTCATTGGAGCTAATCAAACAACTGATATTTTCTC CTTATTGGGAAAGAATGGTTGGTTCATTTTCCCACCCAGATCTACTGACTTTTGCTTGATGGAGACTGTTCCTAGTTGGGAATTTGAGCTTATTGTGAGT AATTTGATTTCAGGAAGCTCTCCTAGCAAGAAGAAAATAATTGCTGGGGTGGTTGGAGGAATAGGCGGTATCCTATTTCTTGCTGCTGCTATAGCTATAT GCTTTAAGCTGACTGGAAGATGGAAGACTTCTTCAAAAGGAACAGGCGATGACATATTGGGAGCAACCGAGTTACAGGGCGGAAGGACAAAGGAAAAAAG GTATTTCATAGCAAAGATGGAATTTCAAAGTGAAGTAAAGATCATTAGCAATGTCCACCATCGGAATCTAGTCCGCCTTCTCGGTTGCTGCAACAGTGGA CCTGAGCCTCTCCTTGTATATGAATACATGGCCAACAGTAGCCTTGACAAGTTCTTATTTGGTGACAAACGAGGCTCCCTCAGCTGGAAACAAAGGGTTG ATATAATCCTGGGGACAGCAAGGGGTCTGGCCTATTTGCATGAAGATTTCCATCAATGCATTATACACAGGGACATCAAAACGAGCAACATTTTTCTTGA CGACGATTTTCAGCCTAAGATAGCGGATTTTGGGTTGGCAAGGCTTCTACCTGAGAGTCAGACTCATCTCGATACGAGATTTGCAGGCACTTTGGGATAC ACGTCACCTGAATATGCATTATATGGTCAGTTGTCAGAAAAGGCTGACACGTACAGCTATGGAATTGTAGTTCTGGAAATTATCAGTGGCCAAAAAAGTG GTGAATTAAGACAAGACCAAATGGCCGAGTATCTTCTGAAGAGGGCCTGGAAACTGTATGAAAGCGGAATGCACAAGGAACTGGTTGACAAAACGATACA CTTTGACGAGTACACAGAAGAAGAAGCAAAGAAAGTGGTGGAAATAGCTTTGATGTGCATTCAACTTTCACCCTCAATGAGGCCGACAATGTCCGAAATA GTTGTGTTGCTGAGAAGCAAGGGATCAATACAGCTCAATCAGTCGCTAGAAAAGCCTGCATTTGCCGATTCCTATCCTAACTTTCTTCCGGACACGTCCA GCTCAATTGGTTACAACACATCCAACGCCACTGTCTCCATCTCCAGAGTCTCCGGTAGGTAG
AA sequence Show only first row Show all	>Lus10009703 pacid=23160083 polypeptide=Lus10009703 locus=Lus10009703.g ID=Lus10009703.BGIv1.0 annot-version=v1.0 MNDEVTTWPTTRSILLFYIYLNWGLLIKTAASDPGINLLSAGCSQYEVGDLRISRDNLNSSFSELRAKLNGSSSEYFATAHRTSGQEPVYTMGQCRNYMS KPDCLACFDDAVARILNCSSANGARVILDGCFLRYERNPFYDQSTQDGHSAVCGNQTISTQDKNYGTALEDLLSNLVIATPKLNGFYAASKKEVVAAGGG NNATVYAVAQCVKTVGQIGCQDCLNLAYADLQRCFSNTYASSINVGCFERFSNTTFIGANQTTDIFSLLGKNGWFIFPPRSTDFCLMETVPSWEFELIVS NLISGSSPSKKKIIAGVVGGIGGILFLAAAIAICFKLTGRWKTSSKGTGDDILGATELQGGRTKEKRYFIAKMEFQSEVKIISNVHHRNLVRLLGCCNSG PEPLLVYEYMANSSLDKFLFGDKRGSLSWKQRVDIILGTARGLAYLHEDFHQCIIHRDIKTSNIFLDDDFQPKIADFGLARLLPESQTHLDTRFAGTLGY TSPEYALYGQLSEKADTYSYGIVVLEIISGQKSGELRQDQMAEYLLKRAWKLYESGMHKELVDKTIHFDEYTEEEAKKVVEIALMCIQLSPSMRPTMSEI VVLLRSKGSIQLNQSLEKPAFADSYPNFLPDTSSSIGYNTSNATVSISRVSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	0	1
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	3.0	0.8624
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	3.0	0.9005
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	7.4	0.8671
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	7.9	0.8811
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026123 [exp]	8.9	0.8362
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	11.0	0.8676
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	11.7	0.8841
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10004233 [exp]	12.7	0.8641
					Lus10017685 [exp]	12.7	0.8033
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	14.5	0.8480

Compare expression of checked genes

Lus10009703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.