Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30520 150 / 4e-43 AAE14 acyl-activating enzyme 14 (.1) AT4G19010 52 / 3e-08 AMP-dependent synthetase and ligase family protein (.1) AT3G48990 49 / 5e-07 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 48 / 9e-07 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 48 / 1e-06 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 47 / 1e-06 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 47 / 2e-06 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT3G21230 47 / 3e-06 4CL5 4-coumarate:CoA ligase 5 (.1) AT3G21240 46 / 4e-06 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G21530 45 / 6e-06 AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036027 [exp] 289 / 2e-98 AT1G30520 436 / 3e-150 acyl-activating enzyme 14 (.1) Lus10035861 [exp] 54 / 1e-08 AT3G16170 643 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Lus10027477 [exp] 52 / 1e-08 AT3G48990 355 / 2e-122 AMP-dependent synthetase and ligase family protein (.1) Lus10039232 [exp] 51 / 1e-07 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013773 [exp] 50 / 1e-07 AT5G16370 422 / 1e-146 acyl activating enzyme 5 (.1) Lus10039161 [exp] 49 / 8e-07 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10015998 [exp] 48 / 1e-06 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 47 / 2e-06 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 47 / 2e-06 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164100 [exp] 178 / 2e-53 AT1G30520 645 / 0.0 acyl-activating enzyme 14 (.1) Potri.006G169700 [exp] 54 / 1e-08 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.001G105900 [exp] 52 / 6e-08 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 51 / 1e-07 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G055700 [exp] 50 / 1e-07 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.003G099700 [exp] 49 / 4e-07 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.018G094200 [exp] 47 / 1e-06 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.004G102000 [exp] 47 / 2e-06 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 47 / 3e-06 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.001G185500 [exp] 47 / 3e-06 AT3G16170 705 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10009704 pacid=23160095 polypeptide=Lus10009704 locus=Lus10009704.g ID=Lus10009704.BGIv1.0 annot-version=v1.0 ATGCAGATATCCGGGGAGACGGAACCACAAGGTGTCTGCGTTGGCAACCCCGCTCCACATGTCGAGTTAAGTGTACGTCAGTGTGGCTCCTCCGCGAGTG GAACAATTTTAACCAGAGGCCCTCACGTTATGATGGGATATTGGGATCAATACACTTCCAAGGAATTGCATTCTACCAACGATGTTTGGCTTGACACTAG AGACGTTGGTTCCATTGATCAAAGTGGCAATCTGTGGCTCCTTGGACGCATGAATGATCGAATAAAGAGTGGTGGTGAGAATGTTTACCCTACCGAGGAA CCCCACCATAAAGATATAGAGGCCGTCCTCTTACAGCATCCGGGAGTTATCCGTGTCGTGGTTGTGGGAATTCCGGATGTTCGGTTGGGAGAGCAGGTCG TTGGTTGTATTCAATTACGAGAAAGCTGGCAATGGTCCGATCACTGTTGTGCAGGACAGGGTGAAAGTAAGGAAGAGATATGTAGCGAGGCTTTGAAGAA GCAATGCAGAGCAAAGAATTTAACTGGGTAA
AA sequence Show only first row Show all	>Lus10009704 pacid=23160095 polypeptide=Lus10009704 locus=Lus10009704.g ID=Lus10009704.BGIv1.0 annot-version=v1.0 MQISGETEPQGVCVGNPAPHVELSVRQCGSSASGTILTRGPHVMMGYWDQYTSKELHSTNDVWLDTRDVGSIDQSGNLWLLGRMNDRIKSGGENVYPTEE PHHKDIEAVLLQHPGVIRVVVVGIPDVRLGEQVVGCIQLRESWQWSDHCCAGQGESKEEICSEALKKQCRAKNLTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10009704 [exp]	0	1
					Lus10027391 [exp]	1.7	0.8272
AT4G34180			Cyclase family protein (.1)		Lus10031454 [exp]	2.8	0.7953
AT1G21350			Thioredoxin superfamily protei...		Lus10018916 [exp]	8.5	0.7927
					Lus10008296 [exp]	11.1	0.7494
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	12.2	0.7948
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10041471 [exp]	19.1	0.7510
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	21.2	0.7925
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	21.7	0.7871
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	22.8	0.7756
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	24.5	0.6703

Compare expression of checked genes

Lus10009704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.