Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14590 208 / 2e-63 EMB2739 embryo defective 2739 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036025 [exp] 448 / 9e-151 AT4G14590 487 / 2e-162 embryo defective 2739 (.1) Lus10015604 [exp] 315 / 2e-104 AT4G14590 496 / 3e-172 embryo defective 2739 (.1) Lus10032903 [exp] 102 / 2e-25 AT4G14590 79 / 1e-16 embryo defective 2739 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G277200 [exp] 287 / 2e-89 AT4G14590 533 / 4e-180 embryo defective 2739 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10189 [flax] [poplar] Ints3 Integrator complex subunit 3
Representative CDS sequence Show only first row Show all	>Lus10009705 pacid=23160086 polypeptide=Lus10009705 locus=Lus10009705.g ID=Lus10009705.BGIv1.0 annot-version=v1.0 ATGTTGAGACAGCATTTCCAGTTGAGTATGAAGATTGGGAGGGACCTTGTTAGATATCGGGGTTCAGGAAGTTATTTCAAGTTTGGTCATCACAAGCGGT ATCAATTGTGGTTTGCAAAGAAGTTTCTCTCGGGGCAAGATAGAGAGACTCTTGTAGTTGATATCATCCGTTTCATATGTTGTGCATATCACCCATCTAA CGAAATTCTTCAATCTGAAGTAATACCAAGATGGGCTGTTTTAGGTTGGCTTCTAAGCTCTTGTAGGAAGAGATATGTTGAAGCCAATGCAAAGCTGGCC TTATTTTACGATTGGCTTTTCTTTGACGAAAGAGGGGATAATGTGATGAATATTGAGCCTGCAATGTTGTTGATGGTGTTTTCCTTGGCACAGTATATTG GCATGACTCAATCAGTTTTGGAAATTTTGTTGCTTCTTGTTGACAATTATGATCCGCGTATTCATATTGTTGCAAAGGGAGTTTCAACAGCTTTCAGTCG TCTTGTTCAGAAAGGTGTTGTACGTTCTATGAATGTTCTGACATCTTGTGATGCCCTGGCACCCTTTTTGAAAGAAAGACTTAAAAGGTTACTGTTGAGA GTAAATGAGGCTGGCCCTTATCAGTTACATCCATGCCGTCTTCCTAATTCTTCTGTGGTGGCCTTGAATCTATCCCATGTTTCTCATCTGGACACTTCGA CATCATCTCTAGAGCATGAACCTGCAAGTGTGTTAGAGCCAAGATGTTGCAAAATTGGTACTGACTCAGAACCAGTTAATTCTACTTGTTCCACTTTTCT AGTTTCAAACATGCAAACTACTTCAGCTTTGCCGACACATATAAATTTTGTTTACAAACTTATACTGACGCTTATAAATCGTACAATATATGTATGCGAC ATAAAAAATGTCGAAACAACTATGGTTTGA
AA sequence Show only first row Show all	>Lus10009705 pacid=23160086 polypeptide=Lus10009705 locus=Lus10009705.g ID=Lus10009705.BGIv1.0 annot-version=v1.0 MLRQHFQLSMKIGRDLVRYRGSGSYFKFGHHKRYQLWFAKKFLSGQDRETLVVDIIRFICCAYHPSNEILQSEVIPRWAVLGWLLSSCRKRYVEANAKLA LFYDWLFFDERGDNVMNIEPAMLLMVFSLAQYIGMTQSVLEILLLLVDNYDPRIHIVAKGVSTAFSRLVQKGVVRSMNVLTSCDALAPFLKERLKRLLLR VNEAGPYQLHPCRLPNSSVVALNLSHVSHLDTSTSSLEHEPASVLEPRCCKIGTDSEPVNSTCSTFLVSNMQTTSALPTHINFVYKLILTLINRTIYVCD IKNVETTMV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	0	1
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	3.0	0.9039
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	4.5	0.9006
AT4G31880			unknown protein		Lus10002307 [exp]	5.5	0.9299
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	5.9	0.8391
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10011662 [exp]	7.7	0.9140
AT5G02910			F-box/RNI-like superfamily pro...		Lus10002819 [exp]	12.8	0.7376
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	13.2	0.8913
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	13.6	0.8367
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	17.5	0.8912
					Lus10021782 [exp]	18.9	0.8881

Compare expression of checked genes

Lus10009705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.