Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57090 179 / 7e-58 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12390 160 / 7e-51 FIS1B FISSION 1B, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036023 [exp] 229 / 3e-77 AT3G57090 223 / 1e-74 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009707 [exp] 103 / 3e-29 AT5G12390 96 / 6e-27 FISSION 1B, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047300 [exp] 215 / 3e-72 AT3G57090 203 / 9e-68 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G041900 [exp] 190 / 2e-62 AT3G57090 215 / 2e-72 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G038900 [exp] 187 / 3e-61 AT3G57090 216 / 1e-72 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009706 pacid=23160099 polypeptide=Lus10009706 locus=Lus10009706.g ID=Lus10009706.BGIv1.0 annot-version=v1.0 ATGGAAGCCAAGCTCGGCAAGTTCTTCGAGTCCGTCACTAACTTCTTCTCCGGTGGCGATCAGATCCCCTGGTGCGACCGTGACATCGTGGCCGGTTGCG AGCAAGAGGTTGTTGAAGCTCAAAAGGGTTCCAATGAGGAACTGAAGAATGAATGCATCATGCGTTTATCATGGGCTCTGGTTCACTCGAAGCAACCAGA AGATGTTCAACGCGGCATAGCTATGCTTGAATATGTGTTGGCCGCACTTACAGCTTCCCTAGGAAATTCCACCAGCCCTTTGAAACAGAGGGAGAAGCTG TATCTTCTGGCTATTGGGTACTTCAGGAGCAGTGAGTACTCGAGGAGCAGGGAGGTGGTGGAAGAATGTTTGAAGATCGAACCAGAATGGAGGCAGGCAC AGACGCTGAAGAAAGCCATTGAAGATCGGGTCACAAAAGATGGTGTGATCGGGATAGGAATTGCTGCTACTGCAGTTGGATTGGTTGCTGGTGGGATTGC TGCTGCCTTGGCGCGGAGGAACTGA
AA sequence Show only first row Show all	>Lus10009706 pacid=23160099 polypeptide=Lus10009706 locus=Lus10009706.g ID=Lus10009706.BGIv1.0 annot-version=v1.0 MEAKLGKFFESVTNFFSGGDQIPWCDRDIVAGCEQEVVEAQKGSNEELKNECIMRLSWALVHSKQPEDVQRGIAMLEYVLAALTASLGNSTSPLKQREKL YLLAIGYFRSSEYSRSREVVEECLKIEPEWRQAQTLKKAIEDRVTKDGVIGIGIAATAVGLVAGGIAAALARRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10009706 [exp]	0	1
AT1G69980			unknown protein		Lus10036679 [exp]	2.2	0.8713
AT4G39235			unknown protein		Lus10004160 [exp]	3.9	0.8514
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	4.2	0.8611
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	8.0	0.8602
AT2G31410			unknown protein		Lus10035165 [exp]	8.4	0.8465
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	8.8	0.8477
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	9.3	0.8628
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	10.7	0.8211
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	12.1	0.8214
AT2G43760			molybdopterin biosynthesis Moa...		Lus10026805 [exp]	15.9	0.8387

Compare expression of checked genes

Lus10009706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.