Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60500 447 / 1e-154 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT3G12990 386 / 7e-133 RRP45A ribonuclease PH45A (.1.2.3) AT3G07750 104 / 4e-25 3'-5'-exoribonuclease family protein (.1.2) AT1G60080 92 / 3e-20 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036022 [exp] 808 / 0 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10001173 [exp] 96 / 7e-22 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10001747 [exp] 96 / 7e-22 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10021789 [exp] 86 / 3e-18 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10034605 [exp] 70 / 8e-13 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10006382 [exp] 55 / 4e-08 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2) Lus10012336 [exp] 51 / 1e-06 AT3G07750 340 / 6e-118 3'-5'-exoribonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253200 [exp] 594 / 0 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.009G047500 [exp] 590 / 0 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.016G055600 [exp] 77 / 2e-15 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10009708 pacid=23160081 polypeptide=Lus10009708 locus=Lus10009708.g ID=Lus10009708.BGIv1.0 annot-version=v1.0 ATGGATTCTCGGTTGGCTAATACCTGGCGCCTGACTGTTAACGAGAAGAAATTTATCAAGACTGCTTTGGCTTCCGATTTGAGAATTGACGGCCGCAATC CCCTTGAGTATCGGAAACTGACAATCAAATTTGGAAGGCAGTCAGTTCTGGATATACTGCTTACATTTGCCTTCAGAGGCTGGATAATATGTAGCTATTC GGAGGATGGGTCGTCAGAGGTGCAACTAGGTCATACTCATGTAATGGGTTTTGTTTCTAGTCAACTTGTTCAGCCTTACCGCGACAGGCCAAATGAGGGA ACAATGTCAATTTTTACCGAGTTTTCTCCAATGGCTGATCCATCTTTTGAGTTAGGCCGTCCTGGAGAATCTGCAATAGAGTTGGGCCGCATAATCGATC GAGGCTTAAGGGAAAGCAGGGCTGTCGATATGGAATCACTTTGTGTTTTGGCGGGGAAGTTAGTTTGGGCCATCCGAATTGATATCCACATCCTAGATAA TGGAGGTAATTTTGTTGATGCTGCTAACGTTGCAGCTTTAGCTGCCCTGTTGACCTTTCGGAGACCAGAATGTTCATTATGTGGAGAAAATGGACAAGAA GTAGTTGTGCATCCACCTGAGGTTAAGGAGCCACTTCCTTTGATAGTACATCATATTCCTATAGCTGTAACGTTTGCGTTTTTCGGCACTGAGCACACTG TGGCAGTGGATCCAACCCATAGCGAAGAGGCTGTTATGGGGGGCCGTATGACAGTAACGGTTAATGCAAGTGGCGATATTTGTGCCATTCAAAAAGCTGG AGGACTAGGTGTGCCGCATAGTGATATTATGCGTTGCTTACGACTTGCTTCCCGCAATGCTGAGTCTATTACAAAAAAGATAAAAGATGCAGTTGAATCA TACAACACAGAGAGAGCATTACGCAAAATAAAGAGACATTCTACTTCTGTTGCCGGCAATGTTTATGTAGAAAATGATACTGTCAAGGAGCAAAATAACA AACTTCCTGCGGAAAGTCTACATGAGTTTTCAACAGCCCAGATGGAGAAAGTGAAGTTAAAATCTGAGGAAAATTCCATCAATGAAGACGATTTCGATCA CCATACTAGATCATCTGAACAAGTTGGAAGTCGGGGCGGGGAGGGAAATGCTTCTGTTTTTCTTGGAGGGCCTTCATGCTGGGATTCTCACACGCAAGGT GTTGATCCAGACTTCCTGAAAGTTTCTCTTGCTTCACAAGGAAAATCCGACTCCAAAGCCGAACAAAATAGTGAAGATAGCGATAATGACGTCCTAATGC AGGAAAAGCCATCTGAAGATGCTAAACCTTCTAGCTTAGCATCAGATTTATCCGAACCAGTAGCACAAACCAGCAGAGTGAAGACTCTCAAGGATGCCGT CAAGCCAAAGAACAAGAGAAGAAAGAGGGCCAACTCCAACATGAATGCCAGTTAG
AA sequence Show only first row Show all	>Lus10009708 pacid=23160081 polypeptide=Lus10009708 locus=Lus10009708.g ID=Lus10009708.BGIv1.0 annot-version=v1.0 MDSRLANTWRLTVNEKKFIKTALASDLRIDGRNPLEYRKLTIKFGRQSVLDILLTFAFRGWIICSYSEDGSSEVQLGHTHVMGFVSSQLVQPYRDRPNEG TMSIFTEFSPMADPSFELGRPGESAIELGRIIDRGLRESRAVDMESLCVLAGKLVWAIRIDIHILDNGGNFVDAANVAALAALLTFRRPECSLCGENGQE VVVHPPEVKEPLPLIVHHIPIAVTFAFFGTEHTVAVDPTHSEEAVMGGRMTVTVNASGDICAIQKAGGLGVPHSDIMRCLRLASRNAESITKKIKDAVES YNTERALRKIKRHSTSVAGNVYVENDTVKEQNNKLPAESLHEFSTAQMEKVKLKSEENSINEDDFDHHTRSSEQVGSRGGEGNASVFLGGPSCWDSHTQG VDPDFLKVSLASQGKSDSKAEQNSEDSDNDVLMQEKPSEDAKPSSLASDLSEPVAQTSRVKTLKDAVKPKNKRRKRANSNMNAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	0	1
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	1.0	0.8812
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	4.6	0.8120
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	4.9	0.8258
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	5.1	0.8365
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	7.5	0.8090
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	8.9	0.7439
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	9.2	0.8315
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	11.2	0.8006
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	11.8	0.8252
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	15.7	0.7516

Compare expression of checked genes

Lus10009708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.