Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13370 1993 / 0 CHR5 chromatin remodeling 5 (.1) AT2G25170 532 / 2e-163 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 488 / 7e-149 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT3G06400 454 / 4e-138 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 452 / 2e-137 CHR17 chromatin remodeling factor17 (.1.2) AT5G44800 457 / 6e-133 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G06010 439 / 4e-132 ATCHR12 Homeotic gene regulator (.1) AT5G19310 424 / 5e-127 Homeotic gene regulator (.1) AT2G44980 382 / 4e-114 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G66750 365 / 6e-109 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022423 [exp] 2805 / 0 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10005339 [exp] 530 / 1e-162 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 527 / 3e-161 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10033967 [exp] 459 / 1e-134 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10038363 [exp] 442 / 2e-127 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10034064 [exp] 414 / 4e-123 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10036223 [exp] 425 / 2e-122 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10010522 [exp] 411 / 2e-122 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 381 / 3e-114 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047800 [exp] 2215 / 0 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.001G253400 [exp] 2210 / 0 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.006G262200 [exp] 541 / 3e-166 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 527 / 1e-160 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.010G021400 [exp] 459 / 7e-140 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 458 / 2e-139 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.001G123400 [exp] 458 / 5e-133 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 458 / 7e-133 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.010G091200 [exp] 427 / 8e-128 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 427 / 1e-127 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10009711 pacid=23160094 polypeptide=Lus10009711 locus=Lus10009711.g ID=Lus10009711.BGIv1.0 annot-version=v1.0 ATGAGCCACACTGTTAAAGACTGGGGTGCTGCAGACTCTGACGATGCTGCTGATGATTTGGATGCCTTAGATGATGATGATGATTTTTATTACACAAAAA AACCGAAGGGAAGACAGCGGGTTAACGGTGGCCGTAACACAAAATCTGATAGAGAGCGCAAGCCCTCAAATTCTCAAGCACGGCAAAGCAGAGGCAAGAC ATCATATGAAGATAATGTGTTCTCCGCTGAGGATTCAGAGAGTGAGAGTGATGAAGAATTTAAAAGTATGACTCGTAGAGGAACGAACCTTCGGAAGTCT AATGCTCGCTCATTAACACATACCAGTGGGAGAAATAATGAAGTTCGCAGTTCAGGTAGGTCAGTCCGGAAGGTATCCTATGTTGAAAGTGACGAAAGTG AAGAAATTGATGAGACAAAGAAGAAGAAGTCTCAAAAGGAAGAAATGGAGGATGATGATGGAGATTCTATAGAAAAGGTGTTGTGGCATCAGCCAAAGGG CATGGCTGAAGAAGCTGTTAAGAACGATAAATCAGCAGAACCTGTTCTATCTACTCACATTTATGATTTGGAGCCAGATTGGAATGCTGTGGAATTCTTG ATAAAGTGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAATCTTTCTCTGAACTACAAAATCTGAGCGGTTTTAAGAAGGTGCTGAACTATACCAAAA AAGTAGTAGAAGATATGAGGTACCGGAGGATGCTCACTCGTGAAGAGATTGAGGTCAATGATGTGAGCAGGGAAATGGATTTGGATCTTATCAAACAAAA TAGCCAGGTGGAAAGAGTTGTTGCTGACCGAATTGGCAAGGATAGTTCTGGTAATATTATCCCCGAGTATCTAGTCAAGTGGCAAGGACTCTCTTATGCT GAGGCAACCTGGGAAAAGGATGTTGATATTGCTTTTGCTCAAGATGCAATAGATGAATTTAAGGCACGTGAGGCTGAAATTGCCGTACAAGGAAAAACAT TGGATTTGCAGCGAAAGAAAAGCAAAGCAAGTTTGAGAAAGCTTGATGAGCAGCCTGAGTGGATCAAAGGAGGAAAGCTTCGTGATTATCAGCTAGAGGG CTTGAATTTTCTTGTGAACAGCTGGAGAAATGACACGAATGTCATTTTAGCTGATGAGATGGGTCTTGGGAAAACAGTGCAATCAGTTTCAATGCTTGGT TTTCTACAGTTTGCTCAACAGGTCCCTGGGCCATTTCTTGTTGTTGTGCCATTGTCCACACTATCCAACTGGGCGAAAGAGTTTAGAAAATGGATTCCGG ATATGAATATTATAGTGTATGTTGGTACCCGTGCCAGCCGGGAGGTTTGCCAGCAATATGAATTCTACAATGAGAAAAAAGTTGGTAGGCCGGTAAAGTT CAATGCATTGTTGACTACATATGAAGTTGTTCTGAAGGACAAGGCTGTACTGTCAAAGATCAAATGGAATTATTTGATGGTTGATGAAGCTCACAGGTTA AAAAACAGTGAAGCACAGCTGTACACGACTCTCTGTGAATTCAGTACCAAGAACAAATTGCTGATAACCGGCACTCCTCTGCAAAACAGCGTTGAAGAAC TATGGGCTTTGCTGCATTTTCTCGATCCGGAAAAGTTCAAGAACAAAGATTATTTTGTCCAGAACTACAAGAATCTTAGCTCATTCAATGAAAACGAGCT TGCTAATCTGCATATGGAGTTGAGGCCTCATATTTTAAGAAGAGTCATTAAAGATGTGGAGAAATCGTTGCCTCCCAAAATTGAGCGTATTTTGAGGGTT GAAATGTCTCCTTTACAGAAGCAGTACTATAAGTGGATCTTGGAACGCAACTTCCATGACTTAAACAAAGGAGTTCGTGGAAATCAGGTGTCACTTCTTA ACATTGTGGTAGAGCTCAAGAAGTGTTGTAATCATCCCTTTCTCTTTGAAAGTGCGGACCATGGTTATGGAGGGGAGACCTTTGATGATGGAAGCAAATT GGAGAGAGTTATCTTGAGCAGTGGAAAGCTAGTAATACTTGACAAATTACTTGTACGATTGCACGAGACAAAACATCGCGTTCTTATTTTCTCACAGATG GTTAGAATGCTGGACATACTGGCAGAGTATATGAAACTCAGAGGGTTTCAGTTTCAGAGGCTTGATGGTAGTACAAAGGCTGAGATGCGTCATCAGGCTA TGGAACATTTTAATGCACCTGGGAGTGATGATTTTTGCTTTCTTCTATCAACTAGGGCGGGTGGTCTTGGTATAAACCTTGCAACAGCCGACACGGTTAT AATATTTGATTCAGATTGGAATCCACAAAATGACCTTCAGGCTATGAGTAGAGCTCATAGAATTGGACAACAAGAAGTTGTTAACATCTATAGATTTGTG ACGAGCAAAAGCGTCGAGGAGGATATCCTGGAACGAGCTAAAAAGAAAATGGTTCTTGACCATTTGGTGATCCAGAAGTTGAATGCAGAGGGGAGATTAG AAAAGAAAGAAGCAAAGAAGGGGAGTTGTTTTGACAAAGTAAGGAGACAGTTGGATAGTCCCTCCCCTAGAGATGAATCAAATTCAGCTGATAATGAACT GTCTGCAATTTTGCGGTTTGGGGCAGAGGAACTCTTTAAAGATGAAAGAAGTGATGAAGAAAACAAGAAACGGCTCTTAAGCATGGATATAGATGAAATC CTGGAAAGAGCAGAGAAGGTTGAAGAAAAGGAAGGTGCACAAGAGGAAGGGCATGAATTGTTAAGTGCATTTAAGGCAAGTCTTTATATCCAACATAGTT TCATGCAATTCTGTTTTCCGTGCATGACTATAGTGTTTAGTTTTGTTGCAAATTTTGGTAGTGCTGAAGATGATACAAGTTTCTGGAGCCGGTGGATAAA ACCAGAAGCTGTAGCTGATGCTGAAAACCATTTAGCTCCCCGTTCAGCAAGAAATACGAAGAGCTATGCTGAGACAGATCCAGCAGGGAGAGGTGCGAAA CGAAAAAAGAAAGGTTCTGAGCCATCTGAACCTCAGGAGAGAGTGCAGAAGCGTAGAAAAGCGGCAGAGAACTCTACCCCGTTAGTATCTATGATTGATG GAGCTTCTGCCCAAGTAAGAGATTGGTCGTATGGGAATCTGTCTAAGAGAGATGCCTTGCGCTTTTCTCGTGCGGTAATGAAGTTTGGAAATCCGAGCCA ACTTGATTTGATAGCTGCTGACGTCGGTGGAGCTATTGCAGCAGCTCAACCAGATGCACAGATTGAGCTTTTTGATGCCTTGGTAGAGGGTTGTAAAGAA GCTACTGAAGTAGAACATATGGACCCAAAGGGCCCATTGTTAGATTTTTTTGGCGTTCCTGTTAAGGCTAATGATTTGCTCAATCGTGTTCAAGAGCTTC AGCTACTGGAAAAACGAATTAGTCGCTATGAGAATCCCGTTGCACAGTTCCGTGTATTGTCAGACCTCAAACCTTCGAATTGGTCTAAGGGTTGTGGGTG GAATATGATTGATGATGCACGATTACTTCTGGGCATATATTACCATGGATTTGGTAATTGGGAAAAGATAAGGTTAGATGAAAGGCTTTGCCTCTCAAAG AAGATTGCCCCAGTAGAACTCCAGCATCATGAGACATTTCTACCACGGGCCCCAAATTTGAGGGACCGGGCTAATGCTCTCTTAGAAATGATAATCAATA ATGAAGGCTTGTTTTCACCACTTGAGGTTGGAATGTGTAATGGTGTCCCGGTAGTGCATTCTCTATCGTTTAAGACTGGAGCTGCTGTCACTATCGAACT TACAGTTGCTGGTGGCAAGAATTCCAAGGTCAGGGCAGGTCGAAAAGCTTCTAAAAAGGAGACTGGACCTATTGTCAATGATGATGCTGCATTTCGGATG AGGGCCAAGAAGATGAAATCTAATTTAGGGATGGTTAATACCCAGAGCAGCAGAAACCGACATCAGAAACCCCCGAGAGTTGAACAGCTAGTGAAAGAGG AAGGTGAGATGTCAGATAATGAAGAATTGAGCGTCCAATTCAAGCAAATGAAATGGACGGAATGGTGTCATGATGTCATGGTTGAGGAGATTAAAACACT TAAACGTCTCAATAGGCTTCAGACTACCAGTGCTGATCTCCCAAAGGAGAAGGTACTCTCAAAGATTCGGACCTACCTACTGCTTATTGGGAGAAGAATA GACCAGATTATCTCAGAATATGAAGACCTTTATAAGCCAGATAAGTTAGGAATGCGGCTGTGGAAGTATGTTTCGACCTATTCAAATTTATCCGGGGAGA AGCTTAAACAAACATACTCAAAATTGAAAAAGGAGCTGGATGAGGAGGCAGGGGTTGGTCCCTCCTATGTGAATGGAGATGGGGATTCAAGTTATTTCCC TCAACTTTCAGGTCATGCTGAGAGACAAAGAGGGTACAAAAATGCTTCTGGTTTTCCATTGTCAGATCCAATTCAGAAAGGCCTTGATACAGGTAAATTT GAAGCATGGAAAAGACGGAGAAGAGCTGAAGCTGAAATACCGTTTCAAACACATACGCTTCCCCAAGCTCAACCTCCGGCACCACGGGTGATGCATAATA ATGCCAACCGTGTGGTCGATCCTAATTCATTGGGGATCCTTGGTGCTGCCCCGTCTGATTCTAGACAGTTCAGTAATGGGAGGCCTTACAGGATGCGTCA AGCTGGTTTTCCTCCGAGATAG
AA sequence Show only first row Show all	>Lus10009711 pacid=23160094 polypeptide=Lus10009711 locus=Lus10009711.g ID=Lus10009711.BGIv1.0 annot-version=v1.0 MSHTVKDWGAADSDDAADDLDALDDDDDFYYTKKPKGRQRVNGGRNTKSDRERKPSNSQARQSRGKTSYEDNVFSAEDSESESDEEFKSMTRRGTNLRKS NARSLTHTSGRNNEVRSSGRSVRKVSYVESDESEEIDETKKKKSQKEEMEDDDGDSIEKVLWHQPKGMAEEAVKNDKSAEPVLSTHIYDLEPDWNAVEFL IKWKGQSHLHCQWKSFSELQNLSGFKKVLNYTKKVVEDMRYRRMLTREEIEVNDVSREMDLDLIKQNSQVERVVADRIGKDSSGNIIPEYLVKWQGLSYA EATWEKDVDIAFAQDAIDEFKAREAEIAVQGKTLDLQRKKSKASLRKLDEQPEWIKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLG FLQFAQQVPGPFLVVVPLSTLSNWAKEFRKWIPDMNIIVYVGTRASREVCQQYEFYNEKKVGRPVKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRL KNSEAQLYTTLCEFSTKNKLLITGTPLQNSVEELWALLHFLDPEKFKNKDYFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRV EMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGETFDDGSKLERVILSSGKLVILDKLLVRLHETKHRVLIFSQM VRMLDILAEYMKLRGFQFQRLDGSTKAEMRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFV TSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSCFDKVRRQLDSPSPRDESNSADNELSAILRFGAEELFKDERSDEENKKRLLSMDIDEI LERAEKVEEKEGAQEEGHELLSAFKASLYIQHSFMQFCFPCMTIVFSFVANFGSAEDDTSFWSRWIKPEAVADAENHLAPRSARNTKSYAETDPAGRGAK RKKKGSEPSEPQERVQKRRKAAENSTPLVSMIDGASAQVRDWSYGNLSKRDALRFSRAVMKFGNPSQLDLIAADVGGAIAAAQPDAQIELFDALVEGCKE ATEVEHMDPKGPLLDFFGVPVKANDLLNRVQELQLLEKRISRYENPVAQFRVLSDLKPSNWSKGCGWNMIDDARLLLGIYYHGFGNWEKIRLDERLCLSK KIAPVELQHHETFLPRAPNLRDRANALLEMIINNEGLFSPLEVGMCNGVPVVHSLSFKTGAAVTIELTVAGGKNSKVRAGRKASKKETGPIVNDDAAFRM RAKKMKSNLGMVNTQSSRNRHQKPPRVEQLVKEEGEMSDNEELSVQFKQMKWTEWCHDVMVEEIKTLKRLNRLQTTSADLPKEKVLSKIRTYLLLIGRRI DQIISEYEDLYKPDKLGMRLWKYVSTYSNLSGEKLKQTYSKLKKELDEEAGVGPSYVNGDGDSSYFPQLSGHAERQRGYKNASGFPLSDPIQKGLDTGKF EAWKRRRRAEAEIPFQTHTLPQAQPPAPRVMHNNANRVVDPNSLGILGAAPSDSRQFSNGRPYRMRQAGFPPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	0	1
AT1G58230			binding (.1)		Lus10042866 [exp]	1.4	0.9372
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	2.8	0.9222
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	3.9	0.9016
AT1G27170			transmembrane receptors;ATP bi...		Lus10038533 [exp]	4.6	0.8915
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	4.9	0.8893
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	6.3	0.8939
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	6.5	0.8921
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	6.6	0.9015
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	7.7	0.8874
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	11.1	0.8232

Compare expression of checked genes

Lus10009711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.