Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13370 151 / 4e-41 CHR5 chromatin remodeling 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022423 [exp] 416 / 3e-134 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253400 [exp] 243 / 8e-73 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 234 / 5e-70 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009712 pacid=23160084 polypeptide=Lus10009712 locus=Lus10009712.g ID=Lus10009712.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTTAGGAACTATTCTCCAGAAACTATCTCTAACAGTGCACCAGAAGAGAAGGGTCAGAATCTTGGTAGAATGGTTGGAAGTGAAGATGTTG ACATGACGTCCAGTGAAAGAGAATTCGATATGAATATTGACGCCCGATATGAAAGTGAGGGTGAACTAGGGGATAGTAGGATGCAAAATGATGGAGTTCC TGATCATGAAGCTAGTGCGAGTAATTCACATTTTCAGCCTTCTGGAAAGAGAAATGTGTCTGGAAAATGGGGTTCAAATTTTTGGAAAGATTGCCGACCT ATGGGTCCTCAGGGTGCATCTGATTCTGGACAGGACTCAAAATCGGATTTTAAAGTTGTTGAAGGTTCGGAAAATAATTTATCAGATGGCCAAGATGACA GATTAGAATCAGAGTATGATGAAGAGGCAAAAGAATCACATAAAGAGTTGAAGGGACATTCTGATGTTCCTGCTGATGAGATGTTGTCGGATGAATATTA TGAGCAGGATGGAGAAGATCCTACTGATTTGACACACTACAAGGGTTTTAGTAATTCAGTTGGATTGAATTCTAGGCATCAGTCAAATCCTGTGTCAGCA AATAACAGTTTGTCTAGGAGATCAAGGGCCCTGCGGAATAGTAAAGATGATGACGATGATGGTGATGGCGATGCTGATTATGAGGAAGAGGAGGAGGATG AAGATGACCCAGATGATGCTGACTTTGACCCAGAATACGGTGGCACTAGTTTTCGTCCAGGCGATAAGGTCATCATCATTTCCGTCCTACCTGTTTGCAT TTGGTTCATACTTTGTGAGAAATTGTGTTTATTGGATACCTGA
AA sequence Show only first row Show all	>Lus10009712 pacid=23160084 polypeptide=Lus10009712 locus=Lus10009712.g ID=Lus10009712.BGIv1.0 annot-version=v1.0 MAFFRNYSPETISNSAPEEKGQNLGRMVGSEDVDMTSSEREFDMNIDARYESEGELGDSRMQNDGVPDHEASASNSHFQPSGKRNVSGKWGSNFWKDCRP MGPQGASDSGQDSKSDFKVVEGSENNLSDGQDDRLESEYDEEAKESHKELKGHSDVPADEMLSDEYYEQDGEDPTDLTHYKGFSNSVGLNSRHQSNPVSA NNSLSRRSRALRNSKDDDDDGDGDADYEEEEEDEDDPDDADFDPEYGGTSFRPGDKVIIISVLPVCIWFILCEKLCLLDT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	0	1
AT1G58230			binding (.1)		Lus10042867 [exp]	1.7	0.9793
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	2.4	0.9765
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011135 [exp]	3.2	0.9687
AT1G58230			binding (.1)		Lus10028167 [exp]	3.5	0.9774
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	4.9	0.9731
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	6.0	0.9685
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009601 [exp]	8.0	0.9613
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10014764 [exp]	8.7	0.9471
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	9.5	0.9600
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	9.9	0.9642

Compare expression of checked genes

Lus10009712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.