Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09150 378 / 1e-131 ATHY2, GUN3, HY2 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022422 [exp] 566 / 0 AT3G09150 386 / 3e-134 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G048000 [exp] 456 / 3e-162 AT3G09150 397 / 6e-139 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) Potri.001G253700 [exp] 454 / 2e-161 AT3G09150 400 / 4e-140 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05996 [flax] [poplar] Fe_bilin_red Ferredoxin-dependent bilin reductase PF06405 [flax] [poplar] RCC_reductase Red chlorophyll catabolite reductase (RCC reductase)
Representative CDS sequence Show only first row Show all	>Lus10009713 pacid=23160108 polypeptide=Lus10009713 locus=Lus10009713.g ID=Lus10009713.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTTTCCCTCTTCCGCTCCTTGTCCTTCCAGCAGCTATGGCGGTTGGCGCAAGCCTCACCACCCACTTCCACTCTCTGCCTCTTTATCTC CTTCTCCTTCTCTTTCTTCTTCATCTTTCTCATATGGGAAATTCATTCAGTTCGCCCTTACTGAAACTGAACGCCAGACCCGTTTGCTCCCATCTCCCCT CCAGGAAAAGTACAATTCACTTACTGCAATAGATGGAAGAACACAACTTCAAATGATGTCATTTCAATCTCCAAAGATTAGGCTACTCCGAAGTTTGAGC ATAGAGAATGAAACCATGCAGGTTTTGGACTTTGCTGGATTTGCCAGACCAGAATTTGATGTTCCCATATTCTGTGCCAACTTCTTCACCACTTCCAACA TAAACATCATAGTATTAGACCTCAACCCTTTGCATGACATTGTAGATCGAAAAGATTACAAGGAGAAGTACTATACTAAATTAATGGCCTTAGGTCTTAG GTATGCAGAGCTTTTCCCATGGGGAGGTAAGCTGACCAGTGAGTCTTTGAAGTTCTTCTCCCCAATTGTGATATGGACCAAGTTTCCTCCCTCAGAGGAA TGCATGTACGATGGTTTGTATTCTGCATTCTCAGACTACTACAAGGCTTGGCTTCACCTAATTGACGATGCTGAAGAGGAAACAGATGAAGTTCAAGTTT CGTGCAACCGTGACGCGCAACACCGTTATCTTACTTGGAGAGCAGAAAAGGACCCGGGACATGGGATTCTGAAGAAGTTGATAGGGGAAATGAGCGGAAA GGAATTAGTGAGGAACTTCCTCTTCGACGGGATTAAGGATATGGGAAGCAAAGGGTTTCTTGATTACTTCCCGGAGTACCGCTGCGACGACGGGTCTGTC AACGAGAAGCGTAGCATGATTGGGAAGTCGTTTGAAAGCCGCCCTTGGGATTCGAGGGGAGAATTCGTCATAAGCTAG
AA sequence Show only first row Show all	>Lus10009713 pacid=23160108 polypeptide=Lus10009713 locus=Lus10009713.g ID=Lus10009713.BGIv1.0 annot-version=v1.0 MASSFPSSAPCPSSSYGGWRKPHHPLPLSASLSPSPSLSSSSFSYGKFIQFALTETERQTRLLPSPLQEKYNSLTAIDGRTQLQMMSFQSPKIRLLRSLS IENETMQVLDFAGFARPEFDVPIFCANFFTTSNINIIVLDLNPLHDIVDRKDYKEKYYTKLMALGLRYAELFPWGGKLTSESLKFFSPIVIWTKFPPSEE CMYDGLYSAFSDYYKAWLHLIDDAEEETDEVQVSCNRDAQHRYLTWRAEKDPGHGILKKLIGEMSGKELVRNFLFDGIKDMGSKGFLDYFPEYRCDDGSV NEKRSMIGKSFESRPWDSRGEFVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	0	1
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	1.4	0.8965
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	2.0	0.8950
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	5.3	0.8724
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	5.7	0.8781
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	6.6	0.8515
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	7.7	0.8666
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	9.2	0.8707
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	10.4	0.8330
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	11.8	0.8531
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	11.8	0.8652

Compare expression of checked genes

Lus10009713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.