Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77210 300 / 4e-97 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT4G02050 255 / 1e-79 STP7 sugar transporter protein 7 (.1) AT5G26340 233 / 8e-71 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G21480 219 / 5e-66 STP12 sugar transporter protein 12 (.1) AT1G11260 212 / 5e-63 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19930 205 / 2e-60 ATSTP4, STP4 sugar transporter 4 (.1) AT1G50310 200 / 1e-58 ATSTP9 sugar transporter 9 (.1) AT3G19940 197 / 1e-57 Major facilitator superfamily protein (.1) AT5G61520 182 / 5e-52 Major facilitator superfamily protein (.1.2) AT5G23270 182 / 1e-51 ATSTP11, STP11 sugar transporter 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022421 [exp] 439 / 6e-151 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10036325 [exp] 233 / 7e-71 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10010534 [exp] 230 / 1e-69 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 229 / 3e-69 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 223 / 4e-67 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10009656 [exp] 214 / 1e-63 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10040993 [exp] 204 / 3e-61 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10002597 [exp] 206 / 4e-61 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 206 / 8e-61 AT1G50310 731 / 0.0 sugar transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253800 [exp] 335 / 3e-110 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G085200 [exp] 309 / 2e-100 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.009G048500 [exp] 247 / 1e-77 AT1G77210 516 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.006G189100 [exp] 245 / 1e-75 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.009G048200 [exp] 239 / 2e-75 AT1G77210 353 / 2e-119 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G113300 [exp] 231 / 4e-70 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.008G151100 [exp] 221 / 2e-66 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 220 / 6e-66 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.004G109765 [exp] 212 / 4e-63 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 212 / 6e-63 AT1G11260 625 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10009714 pacid=23160107 polypeptide=Lus10009714 locus=Lus10009714.g ID=Lus10009714.BGIv1.0 annot-version=v1.0 ATGGCCGGCGGAGGAGCAACCGGGAATGCGAGCCTCAAACGTGCTCATCTATACGAGTACAAAATCACAGGCTACTTCATATTCGCCTGTGTCGTTGGAG CCATCGGCGGCTCCCTCTTCGGCGTCGATCTTGGCGTTTCCGGGGGAGTTACTTCCATGGATGATTTCTTGAAGGAGTTTTTCCCAAAAGTGTACAGAAG AAAACAGGCGCATCTGAACGAGACGGATTACTGTAAATACGACAACCAGGTGCTCACTCTCTTCACTTCTTCACTCTACTTCGCCGCCTTAATCTCCACA TTTGGCGCATCCTATGTTACAAGGAACAAGGGCCGGCGAGCCAGCATCCTCTGCGGGTCAGTCAGCTTCTTCCTCGGCGCCGTTGTCAATGCCTCCGCCG TCAACATCCTTATGCTCATCATCGGCCGCGTTTTCCTCGGCATCGGCATTGGCTTCAGCAATCAGGGGAATGGTCAACCAACTGTTCCAGCTAACGACGT GTTTGGGGATCTTAATAGCCAACCTGATCAACTACGGAACGGAGAAGATCCACCCGTGGGGATGGCGGGTGTCGTTGGGGTTCGCGGCGGGACCGGCGGG GGGGGGTGGGTGCGTGGGGGGGGGCCTCAGCTCGTGATCGGAGCGATCGGAATCCCTATGTTCCAGCAACTCACGGGGAACAACTCAATCCTCTTCTACG CCCCTGTGTTTTTCCAGACCATGGGATTTGGATCCGGAACTTCTCTATACTCCTCCATCATAACAAACGCTGGCCTCGTCGTCGGAGCTCTCATGTCGAT GGTTCTGGTCGATAGAGTAGGCCGGCGAGCACTCTTCCTCGAAGCTGGCGTGGAAATGATCTGTTACATGGTATTGGTGGGCGTGACATTAGGTTACAAG TTCGGAGACGGAGTGGCGCTATCAAAAGGATACTCGATTCTGCTCGTGATAGTGATTTGCTTGTTTGTGACGGCTTTCGGGAGATCTTGGGGGCCATTAG GGTGGCTGGTTCCGAGCGAGCTGTTTCCATTGGAGACGAGATCTGCAGGGCAGAGTGTGGTTGTCTGTGTGAATATGATCTTCACTGCTCTGATTGCTCA GTGCTTTCTGGTGTCGCTCTGCCATCTCCGCTTCGGGATATTCTTGCTCTTTGCTGGTCTCATCTTGATCATGACGGTCTTCATTGCGCTGTTGCTCCCT GAAACCAAGCAAGTTCCTATTGAGGAAGTTTACCTTCTCTTTGAGAACCACTGGTTCTGGAAGAACATAGTTGGTAAGCGCAGGGAGGATAAAGAACTGG AAGAAGTTAAGCTCTCAACTCAGCAGTCGTGA
AA sequence Show only first row Show all	>Lus10009714 pacid=23160107 polypeptide=Lus10009714 locus=Lus10009714.g ID=Lus10009714.BGIv1.0 annot-version=v1.0 MAGGGATGNASLKRAHLYEYKITGYFIFACVVGAIGGSLFGVDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLNETDYCKYDNQVLTLFTSSLYFAALIST FGASYVTRNKGRRASILCGSVSFFLGAVVNASAVNILMLIIGRVFLGIGIGFSNQGNGQPTVPANDVFGDLNSQPDQLRNGEDPPVGMAGVVGVRGGTGG GGWVRGGGPQLVIGAIGIPMFQQLTGNNSILFYAPVFFQTMGFGSGTSLYSSIITNAGLVVGALMSMVLVDRVGRRALFLEAGVEMICYMVLVGVTLGYK FGDGVALSKGYSILLVIVICLFVTAFGRSWGPLGWLVPSELFPLETRSAGQSVVVCVNMIFTALIAQCFLVSLCHLRFGIFLLFAGLILIMTVFIALLLP ETKQVPIEEVYLLFENHWFWKNIVGKRREDKELEEVKLSTQQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	0	1
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	2.0	0.9238
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	2.0	0.9131
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	3.0	0.9147
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	4.5	0.9177
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	5.5	0.8922
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	6.7	0.8968
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	7.1	0.9058
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	7.5	0.8793
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	10.9	0.9052
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	12.0	0.9053

Compare expression of checked genes

Lus10009714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.